Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq12390 129 2e-25 seq8566 93.3 1e-14 >seq12390 Length=60018 Score = 129 bits (142), Expect = 2e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 43838 CAAAGATCTGATGGGCCAGCCGTGGCGTCTTGCGTTTGCATTGCAGGATGCCGGCTGGTA 43897 ||| || ||||||| ||| ||||| | || ||||| ||||||| | |||||||| Sbjct 52340 CAAGGACATGATGGGAATGCCCTGGCGCTTGGCCTTTGCCCTGCAGGACGATGGCTGGTA 52281 Query 43898 TCTCCGACAGGACATCATCTGGCACAAGCCGAACCCGATGCCCGAGAGCGTGCGCGACCG 43957 ||| || || |||||||| ||||| ||||| || || ||||| ||||| || |||||||| Sbjct 52280 TCTGCGCCAAGACATCATTTGGCATAAGCCAAATCCAATGCCGGAGAGTGTCCGCGACCG 52221 Query 43958 CTGCACTAAGGCACACGAATATCTGTTTCTGCTTTCGAAGAGCGAGCGCTACTACTACGA 44017 |||||||||||| ||||| || | ||| |||| ||| | | ||||||||||| Sbjct 52220 CTGCACTAAGGCCCACGAGTACATTTTTTTGCTGAGCAAGTCGGCGAAGTACTACTACGA 52161 Query 44018 C 44018 | Sbjct 52160 C 52160 >seq8566 Length=6269 Score = 93.3 bits (102), Expect = 1e-14 Identities = 182/263 (69%), Gaps = 12/263 (5%) Strand=Plus/Minus Query 19323 GCCGCCGTCGGTCGTGTCGCTGACCGCGGCGGGCATCGTGTACGGGATCGACCTGAAATG 19382 ||||||| |||| || |||||| | | || ||| ||| |||| | |||| || Sbjct 2260 GCCGCCGGCGGTGTCGTTCCTGACCACCTCCAGCGAGTTGTTCGGCATCGGCTTGAAGTG 2201 Query 19383 GGCGTTCCCGGGTGACGGCTCCGCCGGCGACACGCAGCGAACGGAGATCTGGTACAGCCG 19442 || ||||| | || || ||| || || ||||| || ||| ||||||||| || Sbjct 2200 GGGTTTCCCTGCTGGCG------CCGAGGATACCCAGCGCACCGAGCTCTGGTACAACCC 2147 Query 19443 CACGCCGAATCGCGACGACGCGATCAAGTTCTCGGATTTCGCGTTCCCGCAGGCGTCGAC 19502 ||| || | || || ||||| ||| | ||||||| || | ||||||||| |||| Sbjct 2146 GACGAACAACCTCGGCGCCGCGACGAAGCTGGCGGATTTGGCATACCCGCAGGC--CGAC 2089 Query 19503 G-TCGTAT-CAGGGGCTCGCGGTCGGACAGGT-GTTTTATTTCTGGGCGCGCCTGGTCGA 19559 ||| || ||| ||| || | ||| | | ||| | ||||||||||||||||| || Sbjct 2088 TATCGCATGCAGTCGCT-GCTGGCGGGCGCGCAGTTCTTCTTCTGGGCGCGCCTGGTGGA 2030 Query 19560 CACGTCCGGCAACGTCGGGCCGT 19582 | |||||||| ||||||||| Sbjct 2029 CCGCACCGGCAACATCGGGCCGT 2007 Score = 91.5 bits (100), Expect = 5e-14 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 18046 GGATTGGGCGACCGTGTCGATGCGTCGATGGTCGACAAGTGGGCGCTGTA-CGCAATCGC 18104 || |||||| ||| || | | | ||||||||||||||||| ||| || |||| || | Sbjct 3531 GGCTTGGGCCGCCGCATCAAGCCTTGGATGGTCGACAAGTGGGAGCTTTATCGCA-TCTC 3473 Query 18105 GCGTCACTGTGACGAGCTGGTATCGGACGGGAAGGGCGGCAAGGAGCCGCGCTTTACGTG 18164 || |||| ||| || |||| ||||||| ||||||||| ||||||||||||| | || Sbjct 3472 GCAGTACTGCGACCAGTTGGTGCCGGACGGTAAGGGCGGCCAGGAGCCGCGCTTCATCTG 3413 Query 18165 CAAC 18168 |||| Sbjct 3412 CAAC 3409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170592120490510