Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq26061 143 3e-29 seq5074 104 3e-17 >seq26061 Length=1673 Score = 143 bits (158), Expect = 3e-29 Identities = 251/363 (69%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||||| |||||||||| || | ||||| | ||||| || Sbjct 979 CAGGCGAAGTCGCAGTGCATGCCCTCGTCTCGGGAGATGTACTCGTTCGTGAACGTCAGC 920 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || || || ||| || ||||| |||||| Sbjct 919 CCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGATCGAGCAGAACGACCCGGAGAAGAAG 860 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATG 33757 || || || || || || || || | || ||||| | ||| ||| |||| | Sbjct 859 ATGCCCTCCACCGCTGCGAACGCGACGAGCCTCTCCGCG-AACGTGGCGGAGCTGCCG-- 803 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 |||||||| ||||| ||||||||||| | || || |||| ||| || || || Sbjct 802 -ATCCACTTGATGGCCCACTCGGCCTTCTTCGTGACGCACGGCACCGTCGAGATCGCCTT 744 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || || || |||||| | | || | || || ||||| | ||||| ||| | Sbjct 743 GAACAGCGTGTCTTTTTCGGCGTTGTTCTTGATGTACGTGTCGATGAGCAGACTGTACGT 684 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || ||||| |||||||| || || ||||| || |||||||| || | ||||||| || Sbjct 683 CTCGGAATGGATGTTTTCGATCGCGATCTGGAACCCGTAGAAGCACCGGGCCTCGGGGAT 624 Query 33938 CTG 33940 ||| Sbjct 623 CTG 621 >seq5074 Length=2057 Score = 104 bits (114), Expect = 3e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 62382 TTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62441 ||||||||| | |||||||| || |||||||| ||| || | |||| ||||| ||| Sbjct 1552 TTAACTACTGGAAATTCTCCCGATAATACTCTACGAAGATATACATTAGAAGTATAAGGT 1493 Query 62442 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62501 || | | || |||||||||| || || ||| ||||| || ||||| ||||| | | Sbjct 1492 TCGAAACATTCGTTATTTCCCAGGATAATAGAAGTAGATGCTGTGGGCATTGGTGCGATC 1433 Query 62502 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTAT 62538 |||||||||||| |||| || | | | |||||| || Sbjct 1432 AATAAACTATTTTTAAGTCCATGTTTCTTGATTTCAT 1396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629507312486640