Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5074 82.4 7e-11 >seq5074 Length=2057 Score = 82.4 bits (90), Expect = 7e-11 Identities = 246/377 (65%), Gaps = 7/377 (2%) Strand=Plus/Minus Query 37515 ATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTA--GATCTAGAC 37572 |||||| || || ||||||||||| |||||||| | ||| ||| |||| | || | Sbjct 1178 ATCAGCTAATCCTTGAACACCGATTCCTATGGGACGATGCTTCAAATTACTTAGCTTG-- 1121 Query 37573 GATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATT 37632 | |||| | |||||||| | |||| || | |||||| | |||| | ||||||| | Sbjct 1120 GCTTCTTTTGTCGGATAATATGTCCTATCGATAACTTTATTCAAATTTCTCACTAGTACT 1061 Query 37633 TTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTAT---TAACAAATTTACTC 37689 || | | ||||||| ||||| ||| | |||| | ||||| ||| Sbjct 1060 TTTACCACTTTTCTCAATGGTTCGAAATCGAATTCACTATTTTCTCCCACAAACTTAGGA 1001 Query 37690 AACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATC 37749 | | |||| | |||||||| || ||| ||| || | ||| | |||||| Sbjct 1000 AGTGCAATACTCGCAAGATTACAAACTGCAGTTTCTTCCGGAGAAGAAAACTCTATAATT 941 Query 37750 TCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTA 37809 |||||||| | ||||| || | || ||||||| ||| |||| || | || |||| Sbjct 940 TCTGTACATAAGTTACTAGAACGGATAGTTCCCAGATTATTTTGGTTACTTCTTCTATTC 881 Query 37810 CAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGAT 37869 | |||||| | || ||| ||| |||| |||||||| | || ||||| Sbjct 880 GCGGTATCTTTGAACAGAATACTCGGTAATCCTGTCTCTATTTGCGTATCTATAATTTCA 821 Query 37870 TTCCATAAACTTCTTGC 37886 ||||| ||| ||| || Sbjct 820 TTCCACAAAGCTCTCGC 804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468293975400720