Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq26061 143 4e-29 seq5074 114 2e-20 >seq26061 Length=1673 Score = 143 bits (158), Expect = 4e-29 Identities = 252/363 (69%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||||| |||||||||| || ||||| | ||||| || Sbjct 979 CAGGCGAAGTCGCAGTGCATGCCCTCGTCTCGGGAGATGTACTCGTTCGTGAACGTCAGC 920 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || ||||| || ||||| || || || ||| || ||||| || ||||| Sbjct 919 CCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGATCGA-GCAGAACGACCCGGAGAAGAA 861 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTCATG 50135 ||| || || || || || || || || || ||||| | | ||||| ||| | Sbjct 860 GATGCCCTCCACCGCTGCGAACGCGACGAGCCTCTCCGCGAACGTGGCGGAGCTGCCG-- 803 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 |||||||| ||||| ||||||||||| | || || |||| ||| || || || Sbjct 802 -ATCCACTTGATGGCCCACTCGGCCTTCTTCGTGACGCACGGCACCGTCGAGATCGCCTT 744 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 || || || |||||| | | || | || || ||||| | ||||| ||| | Sbjct 743 GAACAGCGTGTCTTTTTCGGCGTTGTTCTTGATGTACGTGTCGATGAGCAGACTGTACGT 684 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || ||||| |||||||| || || ||||| || |||||||| || | ||||||| || Sbjct 683 CTCGGAATGGATGTTTTCGATCGCGATCTGGAACCCGTAGAAGCACCGGGCCTCGGGGAT 624 Query 50316 CTG 50318 ||| Sbjct 623 CTG 621 >seq5074 Length=2057 Score = 114 bits (126), Expect = 2e-20 Identities = 337/513 (66%), Gaps = 15/513 (3%) Strand=Plus/Minus Query 79053 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGG 79112 |||||||||| |||||||||| || |||||||| ||| || | |||| ||||| || Sbjct 1553 ATTAACTACTGGAAATTCTCCCGATAATACTCTACGAAGATATACATTAGAAGTATAAGG 1494 Query 79113 TTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCAC 79172 ||| | |||| |||||||||| || || ||| ||||| || ||||| ||||| | Sbjct 1493 TTCGAAACATTCGTTATTTCCCAGGATAATAGAAGTAGATGCTGTGGGCATTGGTGCGAT 1434 Query 79173 CAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATC-CC 79231 ||||||||||||| |||| || | | |||||| || || || | ||| ||| | | Sbjct 1433 CAATAAACTATTTTTAAGTCCATGTTTCTTGATTTCAT-TTCTA-ATATTATCAAACTCT 1376 Query 79232 AAAGA-TCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTAT 79290 ||| ||||| || | ||||| | ||||| | || | Sbjct 1375 TTAGATTCAGA---------GTTTGCATGATCAGGAGCCAAGATACCTATCGATGCCATT 1325 Query 79291 GATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAAT 79350 |||||| || ||| ||| ||| || | | || | ||| ||| | ||||| Sbjct 1324 GATCCTATGAATGACGAATACCATCCATCGATCTTTGCAAGTTCGCAAGATTCTTCTAAA 1265 Query 79351 GCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCA 79410 ||| || ||| || | ||| || ||| || || | ||||||| | ||| Sbjct 1264 GCTGCGAGATATATTTCTCTGAATATACTCTCGTTTAGTTTGAATGCTTCTGGAGAATCG 1205 Query 79411 AATGGATAATTTAAGAGAAT-AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 79469 ||||| || | ||||| | ||| | || ||||||||||||||||| || || || || Sbjct 1204 AATGG-TAGTCCAAGAGCTTGAAATGTATCAGCTAATCCTTGAACACCGATTCCTATGGG 1146 Query 79470 TCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 79529 | ||| || |||| | | |||||| | |||||||| | |||| |||| Sbjct 1145 ACGATGCTTCAAATTACTTAGCTTGGCTTCTTTTGTCGGATAATATGTCCTATCGATAAC 1086 Query 79530 TTTATTGAGATTCCTGACTATTACTTTGACCAC 79562 |||||| | ||| || |||| |||||| ||||| Sbjct 1085 TTTATTCAAATTTCTCACTAGTACTTTTACCAC 1053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717914935897320