Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq26061 131 2e-25 seq5074 113 6e-20 >seq26061 Length=1673 Score = 131 bits (144), Expect = 2e-25 Identities = 246/357 (69%), Gaps = 10/357 (3%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||||| ||||| |||| || | ||||| | ||||| || Sbjct 979 CAGGCGAAGTCGCAGTGCATGCCCTCGTCTCGGGAGATGTACTCGTTCGTGAACGTCAGC 920 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| || || ||||| || ||||| || || || ||| || || || || ||||| Sbjct 919 CCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGATCGA-GCAGAACGACCCGGAGAAGAA 861 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCAT 42239 ||| || || || || || || || | || ||||| | ||| ||| ||| | Sbjct 860 GATGCCCTCCACCGCTGCGAACGCGACGAGCCTCTCCGCG-AACGTGGCGGAGCTGCCG- 803 Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 |||||||| ||||| ||||||||||| | || || |||| ||| || || | Sbjct 802 --ATCCACTTGATGGCCCACTCGGCCTTCTTCGTGACGCACGGCACCGTCGAGATCGCCT 745 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 | || || || |||||| | | || | || || ||||| | ||||| ||| Sbjct 744 TGAACAGCGTGTCTTTTTCGGCGTTGTTCTTGATGTACGTGTCGATGAGCAGACTGTACG 685 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 | || ||||| |||||||| || || ||||| || |||||||| || | |||||||| Sbjct 684 TCTCGGAATGGATGTTTTCGATCGCGATCTGGAACCCGTAGAAGCACCGGGCCTCGG 628 >seq5074 Length=2057 Score = 113 bits (124), Expect = 6e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 71136 ATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGG 71195 |||||||||| |||||||||| || |||||||||||| || | |||| ||||| || Sbjct 1553 ATTAACTACTGGAAATTCTCCCGATAATACTCTACGAAGATATACATTAGAAGTATAAGG 1494 Query 71196 TTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 71255 ||| | | || |||||||||| || || ||| ||||| || ||||| ||||| | Sbjct 1493 TTCGAAACATTCGTTATTTCCCAGGATAATAGAAGTAGATGCTGTGGGCATTGGTGCGAT 1434 Query 71256 CAATAGACTATTTCTAAGACCATGT 71280 ||||| ||||||| |||| |||||| Sbjct 1433 CAATAAACTATTTTTAAGTCCATGT 1409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670808554883880