Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq17687 105 5e-18 >seq17687 Length=17369 Score = 105 bits (116), Expect = 5e-18 Identities = 229/336 (68%), Gaps = 15/336 (4%) Strand=Plus/Plus Query 99229 TCGGAGACGAACGCGCCCTGTATCCGGAT-GGCG--CTGCGCGCCCCCACTGGCAGAAAT 99285 ||||||||||||||||| || | ||||| ||| ||| | ||| |||| | Sbjct 5485 TCGGAGACGAACGCGCCGTGGACACGGATCGGCAAACTG---GTGCCCGGCGGCATGTAG 5541 Query 99286 AACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 99345 | | |||||| |||| ||||||||||| ||||||| ||| | ||| |||| | Sbjct 5542 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGGGAA 5601 Query 99346 TCGGTGAGG---GACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGG 99402 ||| | | ||| | ||| |||| || || | || | |||| |||||| ||| Sbjct 5602 TCGATCTTGCTCGACACC-TGG--AACGCCATGCGGGTCGGGATGTTGGCCTTGATCAGG 5658 Query 99403 CCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCA 99462 || || | ||| ||||| || || ||||| ||||| |||| | || || ||||| || Sbjct 5659 CCGGTGATCACGTCCACCGACGGACGCTGGGTCGCGAGGATCAAGTGGATCCCGGCGGCC 5718 Query 99463 CGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATC 99522 ||||||||||| ||||| ||| | || | || ||| |||||| | | |||| Sbjct 5719 CGCGCCTTCTGGGCGATACGGGCGATCAGCTCTTCGACC---TTCTTGCCGACGATCATC 5775 Query 99523 ATGAGATCAGCGAGTTCATCCACCACTACCACGATG 99558 || | || || | ||| || ||||| ||||||||| Sbjct 5776 ATCATGTCGGCAAATTCGTCGACCACCACCACGATG 5811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354472848579618