Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq34640 89.7 4e-13 seq29849 89.7 4e-13 seq21875 89.7 4e-13 seq2393 86.0 5e-12 >seq34640 Length=3269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCG 48592 |||||| || |||||||| || || || ||| || |||||||||||||||| ||| || Sbjct 1151 CTCCTTCTGGATGTTGTAGTCCGC-AAGCGTC-CTGCCGTCCTCCAGCTGCTTCCCGGCG 1208 Query 48593 TAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATA 48652 | || || |||||||| || ||| | | ||||||||| || ||| ||| | | Sbjct 1209 AAGATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGACTTCACA 1268 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | | ||||| || | ||||| ||||| || || || || || || || || || Sbjct 1269 TTCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGATTGTCTTGCCCGTCAGGGTCTTA 1328 Query 48713 ACAAAAATCTGCATCGTGTCTT 48734 || || ||||||||| || ||| Sbjct 1329 ACGAAGATCTGCATCTTGGCTT 1350 >seq29849 Length=3363 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||||||||||||||| || | ||| || || ||||||| || ||||| || || Sbjct 1081 CTCCTTTTGAATGTTGTAGTC-GGCAAGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGA 1139 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || || |||||||| || ||| | | |||||||||| || ||| ||| | Sbjct 1140 AGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTCGACTTCACGT 1199 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | || || ||| | ||||| |||| || || || || ||||| || || |||| Sbjct 1200 TCTCAATCGTGTCGTTGGACTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCA 1259 Query 48714 CAAAAATCTGCAT 48726 ||||||| ||||| Sbjct 1260 CAAAAATTTGCAT 1272 >seq21875 Length=4161 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 241 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTTCTGCCGTCCTCGAGCTGC 300 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | | |||||| || ||| | | |||||||||| || || Sbjct 301 TTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTA 360 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | | || || ||| | |||||| ||| | || || || || ||||| Sbjct 361 GACTTCACATTCTCGATCGTGTCGTTTGACTCCACCTCAAGGGTGATCGTCTTCCCGGTC 420 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || || ||||| |||||||||||| Sbjct 421 AGGGTCTTCACGAAAATCTGCATC 444 >seq2393 Length=4323 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||||| | | || | ||||| || |||||| || |||||||| ||||| Sbjct 896 ACCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGC 955 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | | || | || || | |||||| || | | || | || ||||| ||| || Sbjct 956 CAGAGTCCTGC-CATCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCG 1014 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| ||| ||| ||| | | | |||||||| | |||||| Sbjct 1015 GGATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCA 1074 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || || || |||||||||||||| |||||||| Sbjct 1075 CCTCAAGGGTGATAGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 1123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421048853697413