Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq32405 215 3e-51 seq36294 104 1e-17 >seq32405 Length=7639 Score = 215 bits (238), Expect = 3e-51 Identities = 491/734 (67%), Gaps = 10/734 (1%) Strand=Plus/Minus Query 71898 GGGCTTCAGCCGTCCGATCTCATCATTGTCGCCGCCCGCCCATCTATGGGGAAGACCACG 71957 || || ||||| |||| | ||||| ||||||| ||| || || ||||| || ||||| Sbjct 3446 GGCCTGCAGCCAGCCGACTTGATCATCGTCGCCGGCCGTCCGTCCATGGGTAAAACCACC 3387 Query 71958 TTTGCGATGAATCTCGTCGAAAATGCCGCAGTTCGTAACGATAAGCCCGTATTGGTTTTT 72017 || || ||||| || || ||||| |||| | || | ||| ||| ||||| |||||| Sbjct 3386 TTCGCCATGAACCTGGTGGAAAACGCCGTGTTGCGCAGCGACAAGGCCGTACTGGTTTAC 3327 Query 72018 AGCCTTGAGATGCCGAGCCACCAGCTGATGATGCGCTCACTGGCTTCTCTTGCACGCGTT 72077 ||| |||||||| || | |||||| ||||| || | || || | ||| | Sbjct 3326 TCCCTGGAGATGCCAGGCGAATCGCTGATCATGCGTATGTTGTCGTCCCTGGGCCGCATC 3267 Query 72078 GATCAGACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTTTCTGGC 72137 || ||||| | || | || | || | ||||| || ||| ||||| | | Sbjct 3266 GACCAGACCAAGGTGCGTGCCGGCCGCCTGGAAGACGACGACTGGCCGCGGCTGACCTCG 3207 Query 72138 GCAATGGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGCGCCCTGACG 72197 || || | ||| | || | | || | ||||| |||||| | | | | | Sbjct 3206 GC---GGTCAACCTGCTCAACGATCGCAAGCTGTTTATCGATGACACCGCGGGCATCAGC 3150 Query 72198 CCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGAGCATG 72257 ||| | || | || | || | || || | || | || | | | | || Sbjct 3149 CCGTCGGAAATGCGCGCGCGTACCCGACGCCTGGTGCGTGAGCACGGCGATATTGCCCTG 3090 Query 72258 ATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAA----GATAACCGAAC 72313 || ||||||||||||||||| | |||| |||| | ||| || || | ||| || Sbjct 3089 ATCATGATCGACTACCTGCAGTTGATGCAGATCCCGG-GCTCCAGCGGTGACAGCCGGAC 3031 Query 72314 GCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACC 72373 || ||| |||||||||| ||||| |||| || |||| |||||||| ||| | || Sbjct 3030 CAACGAGATTTCCGAGATTTCCCGCTCGTTGAAAGCCCTGGCCAAGGAATT-CAACTGCC 2972 Query 72374 -GGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGG 72432 |||||| || |||| || || || ||||| ||||| |||||| || ||||||| ||| Sbjct 2971 CGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGCCCGA 2912 Query 72433 TAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTC 72492 | || || || || || ||||| ||||| || |||||||| || ||| |||| ||||| Sbjct 2911 TCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTTCG 2852 Query 72493 TGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTA 72552 | || || ||||| || ||||||||||| | ||| || ||||| || || | |||| Sbjct 2851 TATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATCATTA 2792 Query 72553 TCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACT 72612 |||| || || || || || ||||| ||||| | | |||| || | ||| ||||| Sbjct 2791 TCGGTAAACAGCGTAACGGGCCAATCGGCACCACGCGCCTGGCCTTCATCGGTAAATACA 2732 Query 72613 CACGGTTTGATAAC 72626 | || || || ||| Sbjct 2731 CCCGCTTCGAGAAC 2718 >seq36294 Length=49020 Score = 104 bits (114), Expect = 1e-17 Identities = 154/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 21176 CGACAAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGG 21235 |||||||||||| ||||| || ||| |||| |||||||| || ||||||| Sbjct 38999 CGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAATGGCACCGTGTGTCGATGTTCGG 39058 Query 21236 AAAACTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGG 21295 || |||| || || || |||| || | || |||||||| ||||||||||||||||| Sbjct 39059 CAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAAGG 39118 Query 21296 GAAACTTAAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAAT 21355 || || ||||||| ||||| || | | ||| | | |||||||| || ||||| Sbjct 39119 CAAGCTGCAAACCCGCGAGTGG---GAAAAAGACGGCATCAAGCGTTACACCACCGAAAT 39175 Query 21356 TATCGTCAGCCAGGGCGGCACCATGCAAATGATCGGCG 21393 | ||| | | |||||||||||| || | |||| Sbjct 39176 CGTGGTCGACATGCAAGGCACCATGCAACTGCTGGGCG 39213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303089542203573