Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq8416 199 9e-47 >seq8416 Length=35894 Score = 199 bits (220), Expect = 9e-47 Identities = 394/575 (69%), Gaps = 6/575 (1%) Strand=Plus/Minus Query 1938 GCGATGTCGAGCGGAATCTGTACGTATTGGTCCGTGTCGCCGACGCGCTCGTAGACGCGG 1997 || |||||||| || || |||||||||| || || || || |||| || |||||| Sbjct 6584 GCAATGTCGAGGCTGATGGGTTCGTATTGGTCGGTATCACCAACCCGCTGATACACGCGG 6525 Query 1998 ACGTACGACTTGCTACCGATCACCT-GCAGTGCTTCGCCGATGGCTCGCATTGCCTCCAG 2056 | ||| |||||| |||||||||| |||| || ||||| ||||| |||| || | | Sbjct 6524 ATGTAGGACTTGGAGCCGATCACCTGGCAG-GCGTCGCCAATGGCCTGCATGGCGCGCTG 6466 Query 2057 CCAGCGCGGATCGGTGATGTCCAATCGGCGCAGCGCGAGCACGCGGCCGGTGTTGATCTG 2116 |||||| ||||||||| |||| ||||||| ||| || |||||| | ||| ||| | Sbjct 6465 CCAGCGTTCATCGGTGATTTCCATACGGCGCAACGCCAGGACGCGGGCTGTGCGGATGTC 6406 Query 2117 GCCTTCCTTGTCGGTCGCAAACGCCTGCGTGACGATCGCCTGGATTTCGGGGCGTGCGTC 2176 ||| | | ||| ||| ||| || | | || | || | |||||| ||||| | Sbjct 6405 GCCCTTTTGGTCAGTCCGAAAGGCATCATTTACCAGCGTGACCACTTCGGGACGTGCCCC 6346 Query 2177 CGTCGTCCAATCGCGAAGGCACTCGTCGATCATCGACTTCGCGGCCTGCAAGCGTTCATC 2236 | ||||| ||||| |||||||| || |||| | ||| ||||| | |||||| || Sbjct 6345 GGCGGTCCAGTCGCGCAGGCACTCATCAATCAATGCACGCGCAGCCTGGAGGCGTTCGTC 6286 Query 2237 GAACGCGATGCGGTCTTGGATGGCACGCTGGATGCGGTAGCGGCCGTCGAACGAGTACAG 2296 ||| ||||||| || |||| || ||| ||| | | || || ||||| | ||| Sbjct 6285 GAAAGCGATGCTTTCCTGGACTGCGCGCATGATCTTGAAACGCCCATCGAAGCTGATCAG 6226 Query 2297 GGTGACGTTGCCCTTCTTGCCGCCAACCTTCGAGCCATACTCCTCGGCCGAAAGGTCGAT 2356 | |||| || ||||||||||| || | || | ||| |||| ||| || || |||| Sbjct 6225 GCTGACATTTCCCTTCTTGCCACCGATCTGGGCGCCGTACTGCTCAGCACTGAGTTCGAC 6166 Query 2357 GAAGGCCGAGATATCACCGAAAATTCGGGCTTTCAGCTCGACCAGCCCCTTCGATCTC-G 2415 ||||| |||||||||||| ||| || | || |||| | | ||| | | | Sbjct 6165 AAAGGCTTCGATATCACCGAAGGCCGAGGCCTTGAACTTCGCCAG-CACATCGCTGGCAG 6107 Query 2416 TTTTGGCTTCGTCCGCCAGCTCGCGAACGAGGCGATCGCGCTCACGGTCGATCGGCTTGA 2475 ||||| || |||| | | || ||| || ||||| |||| || || |||| Sbjct 6106 CGCGGGCTTTTTCAACCAGGCCAAGTACCAGGGCGTCCCGCTCCAGGTCTATAGGTTTGA 6047 Query 2476 TCATGGTTTCCGGAATCAGGCAGCCTTT-CGCGTC 2509 ||| ||||||| |||| || || ||| |||||| Sbjct 6046 TCAGACTTTCCGGGATCA-GCCGCTTTTGCGCGTC 6013 Score = 174 bits (192), Expect = 4e-39 Identities = 675/1038 (65%), Gaps = 37/1038 (4%) Strand=Plus/Plus Query 14695 CGCCCGTCCAACCTGCGCGGCAAGCAAGGCCGCGTGATCATCGACGAGGCAGCGTTCCAC 14754 ||||||||||||||||||||| || ||| || | |||||||| || |||||||| Sbjct 14145 CGCCCGTCCAACCTGCGCGGCCGTCAGGGCGTTGTCGTGATCGACGAAGCCGCGTTCCAT 14204 Query 14755 GAGCAGCTCGGCGAGCTGCTCAAGGCCGCGATGGCGCTGCTGATGTGGGGCGGTCAGGTT 14814 | | | | | ||||||||| || || || ||||| ||| |||| ||||||||| | || Sbjct 14205 GCGGACTTGGCCGAGCTGCTGAAAGCTGCCATGGCTCTGTTGATCTGGGGCGGTGAAGTC 14264 Query 14815 CACATCATTTCGACGCACGACGGCGTCGACAACGCGTTCAATGAGCTGGTCACGGACGTC 14874 || | || || |||||||| || ||| | ||||| || ||||||| || || Sbjct 14265 CATGTGATCAGCACCCACGACGGTACGGAGAACCCCTTCAACGACCTGGTCAACGAAATC 14324 Query 14875 CGTTCCGGCAAGAAGCCCTACAG-CCTGCATCGCATCACGTTCGCCGACGCAGTCCAGGA 14933 || | |||||| || | | || ||| |||||||| || || || || Sbjct 14325 CGGGCAGGCAAG-CGCAATGGTGAAGTGTTCCGCTGCACGTTCGGTGAAGCCGTTGCTGA 14383 Query 14934 CGGGCTCTACCAGCGCATTTGCCTGCGCAAGGGCGAAGCCTGGACGGCCGAAGGTGAAGC 14993 || || ||| |||| | |||||||| || ||| | | | | || | | || Sbjct 14384 TGGTCTGTACAAGCGTGTCTGCCTGCGTAAAGGCATTGAGTACAGGCTTGAGGATCAAAT 14443 Query 14994 CAAGTGGGTCAAGGA--TATTCGCGCGTCGTACGGCGCGGATGCTGAGGAAGAGCTGGAC 15051 | ||||| || || ||| || || || ||||||| | || || ||||| | ||| Sbjct 14444 CGCCTGGGTGAATGACGTATACG-GCTTC-TACGGCGATGCAGCCGACGAAGAATTAGAC 14501 Query 15052 TGCGTGCCGAAGAACAGCGGCGGCGCATGGCTGTCGC-GC---GCGCTGATCGAGTCGCG 15107 |||||||| | ||| || |||| || || | | || || ||| | ||| ||| Sbjct 14502 TGCGTGCC--ATCCCAG-GGTGGCG-GTGCCTTCCTCAGCATGGCCCTGGTTGAGCAGCG 14557 Query 15108 CATGTCGGC-TGACACGCCGGTGCTGCGCTGGGCCTGCAAACAGGGTTTCGAGGTGCTTC 15166 || || | |||| |||||| |||||| ||| | | ||||||| ||| | Sbjct 14558 CA-GTAATCGTGACGTGCCGGTACTGCGCCTGGCATACCCGCAGGGTTACGAAACCATCG 14616 Query 15167 CCGACCACATCCGCGCAGCCGAATGCCGCGATTGGCTCGAAGCGACGCTCGGCCCGCTGC 15226 |||| ||| | ||| ||||| | || || ||| ||||| | | ||| |||| Sbjct 14617 CCGAACACTTGCGCCTGGCCGAGTCCCTGGAGTGGTGCGAAGAGCATTTGCTCCCTCTGC 14676 Query 15227 TCACGGCGCTCCCGGTCGACGCCCGCTCGTACAACGGCGAGGACTTCGGACGGACTGGCG 15286 | |||| | || | |||| | | | | ||| ||||||||| || | |||| Sbjct 14677 TTTCGGCCATTCCCCTGGACGTTCAGAGCTTCTATGGCATGGACTTCGGGCGCTCCGGCG 14736 Query 15287 ACCTGACGGTCCACGTGCCGCTGATCGAACAACAGAACCTGGTTCGC---CGCGTGCCGT 15343 |||| ||||| | ||| || || || | ||||| ||| ||| ||| ||| | Sbjct 14737 ACCTCTCGGTCTTCTGGCCATTGCTCAAAGAGCAGAATCTG---CGCAAACGCACGCCCT 14793 Query 15344 TCATCGTCGAGCTGCGCAACGTGCCGTTCCGGCAGCAGGAGCAGATCGCCTTCTACCTGC 15403 | | ||||||||||| ||||| |||||| ||| || ||||| || ||| | Sbjct 14794 TTGTGGTCGAGCTGCGTAACGTCCCGTTCAAGCAACAACTCCAGATTAAGTTTTACATCA 14853 Query 15404 TTGATCGGCTCCCGCGCTTCACGGGCGGCGCCTTCGACGCGCGGGGCAACGGCCAATACC 15463 | ||| | || ||| |||||| |||||| ||||||||||| | | Sbjct 14854 TCCGTCGCTTACCCAATTTCCTCAAAGGCGCCGACGACGCCAGGGGCAACGGCTCGCAAC 14913 Query 15464 TCGCAGAAGTCGCGATGCAG-CG-CTACGGC-GCATCGCGCATCCAGCAAGTGATGCTGT 15520 | | |||| | | ||| | || | |||| || | |||||| ||| |||||||| Sbjct 14914 TGTCGGAAGACAC--TGCCGTCGAGTTCGGCTTCAAC-CGCATCGAGCGTGTGATGCTCA 14970 Query 15521 CCGAGTCGTGGTATCGCGAGCACATGCCGCCCGTGAAGGCGGCGTTCGAAGACGGCACGA 15580 ||||| ||||||||||| ||||||| || | ||||| || | ||||| | ||| Sbjct 14971 CCGAGGGCTGGTATCGCGACAACATGCCACCGTTCAAGGCCGCCCTGGAAGATGACACCT 15030 Query 15581 TCGACGGCCTCCCGAAGGATGCCGACGTGCTCGCGGACCTGCGCGCCGTACAGGTCATCA 15640 || ||| | ||||| || |||||| || ||| |||| ||| | | | | ||| Sbjct 15031 TCTACGACATCCCGGCCGACAAAGACGTGGTCAGCGACGTGCGTGCCTTTCGGATGGTCA 15090 Query 15641 AGGGCGTGCCGCGCATCCCGGA------CGTCCGCGCGACCGGCCAGGACGACGG---CA 15691 |||| ||| | ||||||||||| | | || || ||| | | | ||| || Sbjct 15091 AGGGTGTGGCCCGCATCCCGGAGAAACGCACCAACGAGAAAGGCGAAAAAGCCGGCCCCA 15150 Query 15692 AGCGCCACGGCGACGCCG 15709 |||||||||||||||||| Sbjct 15151 AGCGCCACGGCGACGCCG 15168 Score = 98.7 bits (108), Expect = 2e-16 Identities = 396/610 (65%), Gaps = 34/610 (6%) Strand=Plus/Plus Query 13338 TGCAGTACGTGCGCCGCGAAGACTACGTGCGCAACCAGACCGTCATCGAAGCCAAGCTCG 13397 |||| ||||||||||| ||||||||||||||| ||| ||||| ||||| |||||||| | Sbjct 12824 TGCACTACGTGCGCCGGGAAGACTACGTGCGCGGCCAAACCGTGATCGAGGCCAAGCTTG 12883 Query 13398 ACGCGATCGCGCTCAGATTCGAAAACTTACAACTCCGGGGAAATCAATGACGCCCACCAA 13457 | ||| | || |||| | |||| | | ||| | ||| | ||| | || Sbjct 12884 ATGCGTTGGCCCTCAAGCTAGAAACCGTTCAATT-----AAAAGGACTGA-----AGTAA 12933 Query 13458 TCCGCTGGGAATCGACCACGCCAAGGTGCGCCGCGAATCGCTGCGCTGGTATCTGATTCT 13517 || |||||| |||||| |||||| ||||| ||||||||||| | || Sbjct 12934 -----TGAACATCGACGCCGCCAAAACGCGCCGGGAATCCCTGCGCTGGTACATCATCAA 12988 Query 13518 GGCGCTGTACAACGCGCGGCCCGAGGAAGTCGTC--GAGGACGTGATCCAGATGACGATG 13575 | | ||| ||| | |||| |||| || || || |||| ||| | | || || Sbjct 12989 GACCCTGGACACCTCGCGCCCCGTAGA--TCCTCATGAGGCTGTGGTGTTGTCCACTATC 13046 Query 13576 CGCTCGATCTTCGCCGACATCACGGCGCTTGAGGTGCGCAAGGAACTGGACTACCTCGCC 13635 | |||| ||||| ||| | | ||| ||||| ||||| ||||| | ||| Sbjct 13047 CAAGGCATCTATCCCGACGCCACCACCATGGAGCTGCGCCGCGAACTTGACTATTTGGCC 13106 Query 13636 GATCGCGTGCTGGTGAAGCTGCGCAAGGAACCGTCCGGCCGCTGGTGGGGCGATCTCACG 13695 || || ||||||| |||| ||| | || ||| ||| ||| || || Sbjct 13107 GACCGTAGCCTGGTGACGCTGGACAAAAAGCCCAACGGTGTGTGGATCTGCGGCCTGACC 13166 Query 13696 CGCTACGGCGTCGACATCGCCGAGTACACGATCGATTGCGAGCCGGGCATCGCGCGGCCG 13755 | |||||| ||||| || || || ||||| |||| ||| | || || | || || || Sbjct 13167 CACTACGGGGTCGATATTGCGGAATACACCATCGCCTGCAATCCAGGTGTTGCCCGTCCA 13226 Query 13756 GCCAAGTACTG--GAGCCAGTGACATGGGGCGCAGCAGCGGCGTGCAACGCCTGCCGAAG 13813 | |||||||| || || || | |||||||| || | || ||||||| ||| Sbjct 13227 GAAAAGTACTGGTGACCCTATGCC--CCCGCGCAGCA-AGGTGGCCA--GCCTGCCCAAG 13281 Query 13814 GCCGTGCGCGA-ATGGCTCGAAAGCGCGCTCGTCGAGGGCAACTTCACGGGCTATCAGGA 13872 | || | || |||||||| | || || | ||| |||||||| | || | | Sbjct 13282 TCGGT-CAAGACCTGGCTCGACAAGGCCCTGGCCGAAAACAACTTCAGCGATTACGAAGC 13340 Query 13873 GCTGGAGCAAACG--CT-TCGCGACAAGGGCTACCAGATCAGCAAGTCGGCGATCCATCG 13929 ||| || || | || ||| | | |||| | |||||||||||||||| | ||||| Sbjct 13341 CCTG--GCCAATGAACTGTCGAG-CCAGGGTTTTTCGATCAGCAAGTCGGCGCTACATCG 13397 Query 13930 GTACGGGCAG 13939 || || ||| Sbjct 13398 CTATGGCCAG 13407 Score = 96.9 bits (106), Expect = 8e-16 Identities = 312/477 (65%), Gaps = 12/477 (3%) Strand=Plus/Plus Query 11989 TACCGCGCCGAGCTGACGCGCAACGCACGTGCCGTCTGGGGCATGGATGCGCCAGTCTCG 12048 |||||| ||| ||||| |||| ||| | | | |||||| ||||||| || || || Sbjct 11252 TACCGCCGCGACCTGACCCGCATCGCCCAGTCGGAATGGGGCCTGGATGCACCGGTATCC 11311 Query 12049 TCGTTCGCGGCGCAAATCCACCAGGAGAGCCGCTGGCGCGCGGACGC--CGTCAGCGTCG 12106 | ||||| || || ||||||||||| ||||||||| ||||| ||| || || Sbjct 11312 ACCTTCGCCGCTCAGATCCACCAGGAAAGCCGCTGGAAGTTCGACGCGAAGTC-GC-CCG 11369 Query 12107 TTGGTGCGCGCGGGATGTCTCAATTCATGCCCTCGACCGTCGACTGGATCGCGGGCGCCT 12166 | ||||||| || || || | ||||||||||||| | |||| | || | | Sbjct 11370 TCGGTGCGCAAGGCTTGGGCCAGGTGATGCCCTCGACCGCCACCTGGCTTGCCGAGTTGT 11429 Query 12167 ATCCGGCCGAGCTGGGCGAGGCGCAGCCGTTCAACCCGTCCTGGTCGATTCGTGCGCTCG 12226 ||| | || ||| ||| |||||| |||||| ||||| || | || || | Sbjct 11430 TTCCCAAGGCTCTCGGCAAGGTCGAGCCGTATAACCCGGTTTGGTCCATGCAGGCACTTG 11489 Query 12227 TGCGGTACGACCGGCACCTCTGGGAGCGCATCACGGCGGCCGGTGCATGCGAGCGCATGG 12286 | | || ||||| || | | ||||||| |||| || | ||||| | || Sbjct 11490 TCAGCTATGACCGCTGGCTAGCGAACCGCATCAAGGCGCGTGGCCCCTGCGAACAAGGGG 11549 Query 12287 CGATGACGCTGTCGGCCTATAACGGCGGCCTGGGCTGGGTCTATCGCGATCAGCGCGTGA 12346 || ||| || || ||||| |||||||| |||||||||| || | | | ||| | Sbjct 11550 CGCTGATCCTTTCCGCCTACAACGGCGGTTTGGGCTGGGT-GAT--CAAAGACCGCAAGT 11606 Query 12347 CGGCTGCCGGC----GGCGCCGATCGGCAACGCTGGTTCGGCCATGTCGAGCGGTTCAAC 12402 ||| |||| || ||||||| || ||||||| | |||||||||||||| Sbjct 11607 TGGC-ATCGGCTAAGGGTGCCGATCCGCTGACCTGGTTCAACTCCGTCGAGCGGTTCAAT 11665 Query 12403 GCCGGCCGGCACGCGGCCGCTTTCCGCGAGAACCGCGGCTACCCGCGCGTGATTCTG 12459 |||||| || || || ||| || || || |||||||| |||| ||| Sbjct 11666 AACGGCCGCTCGGCTGCTGCGTTCAAGGAAAATCGTCAATACCCGCGTCTGATCCTG 11722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117417019653260