Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02]
39,413 sequences; 107,915,492 total letters
Query= NC_005882.1
Length=36748
Score E
Sequences producing significant alignments: (Bits) Value
seq8416 199 9e-47
>seq8416
Length=35894
Score = 199 bits (220), Expect = 9e-47
Identities = 394/575 (69%), Gaps = 6/575 (1%)
Strand=Plus/Minus
Query 1938 GCGATGTCGAGCGGAATCTGTACGTATTGGTCCGTGTCGCCGACGCGCTCGTAGACGCGG 1997
|| |||||||| || || |||||||||| || || || || |||| || ||||||
Sbjct 6584 GCAATGTCGAGGCTGATGGGTTCGTATTGGTCGGTATCACCAACCCGCTGATACACGCGG 6525
Query 1998 ACGTACGACTTGCTACCGATCACCT-GCAGTGCTTCGCCGATGGCTCGCATTGCCTCCAG 2056
| ||| |||||| |||||||||| |||| || ||||| ||||| |||| || | |
Sbjct 6524 ATGTAGGACTTGGAGCCGATCACCTGGCAG-GCGTCGCCAATGGCCTGCATGGCGCGCTG 6466
Query 2057 CCAGCGCGGATCGGTGATGTCCAATCGGCGCAGCGCGAGCACGCGGCCGGTGTTGATCTG 2116
|||||| ||||||||| |||| ||||||| ||| || |||||| | ||| ||| |
Sbjct 6465 CCAGCGTTCATCGGTGATTTCCATACGGCGCAACGCCAGGACGCGGGCTGTGCGGATGTC 6406
Query 2117 GCCTTCCTTGTCGGTCGCAAACGCCTGCGTGACGATCGCCTGGATTTCGGGGCGTGCGTC 2176
||| | | ||| ||| ||| || | | || | || | |||||| ||||| |
Sbjct 6405 GCCCTTTTGGTCAGTCCGAAAGGCATCATTTACCAGCGTGACCACTTCGGGACGTGCCCC 6346
Query 2177 CGTCGTCCAATCGCGAAGGCACTCGTCGATCATCGACTTCGCGGCCTGCAAGCGTTCATC 2236
| ||||| ||||| |||||||| || |||| | ||| ||||| | |||||| ||
Sbjct 6345 GGCGGTCCAGTCGCGCAGGCACTCATCAATCAATGCACGCGCAGCCTGGAGGCGTTCGTC 6286
Query 2237 GAACGCGATGCGGTCTTGGATGGCACGCTGGATGCGGTAGCGGCCGTCGAACGAGTACAG 2296
||| ||||||| || |||| || ||| ||| | | || || ||||| | |||
Sbjct 6285 GAAAGCGATGCTTTCCTGGACTGCGCGCATGATCTTGAAACGCCCATCGAAGCTGATCAG 6226
Query 2297 GGTGACGTTGCCCTTCTTGCCGCCAACCTTCGAGCCATACTCCTCGGCCGAAAGGTCGAT 2356
| |||| || ||||||||||| || | || | ||| |||| ||| || || ||||
Sbjct 6225 GCTGACATTTCCCTTCTTGCCACCGATCTGGGCGCCGTACTGCTCAGCACTGAGTTCGAC 6166
Query 2357 GAAGGCCGAGATATCACCGAAAATTCGGGCTTTCAGCTCGACCAGCCCCTTCGATCTC-G 2415
||||| |||||||||||| ||| || | || |||| | | ||| | | |
Sbjct 6165 AAAGGCTTCGATATCACCGAAGGCCGAGGCCTTGAACTTCGCCAG-CACATCGCTGGCAG 6107
Query 2416 TTTTGGCTTCGTCCGCCAGCTCGCGAACGAGGCGATCGCGCTCACGGTCGATCGGCTTGA 2475
||||| || |||| | | || ||| || ||||| |||| || || ||||
Sbjct 6106 CGCGGGCTTTTTCAACCAGGCCAAGTACCAGGGCGTCCCGCTCCAGGTCTATAGGTTTGA 6047
Query 2476 TCATGGTTTCCGGAATCAGGCAGCCTTT-CGCGTC 2509
||| ||||||| |||| || || ||| ||||||
Sbjct 6046 TCAGACTTTCCGGGATCA-GCCGCTTTTGCGCGTC 6013
Score = 174 bits (192), Expect = 4e-39
Identities = 675/1038 (65%), Gaps = 37/1038 (4%)
Strand=Plus/Plus
Query 14695 CGCCCGTCCAACCTGCGCGGCAAGCAAGGCCGCGTGATCATCGACGAGGCAGCGTTCCAC 14754
||||||||||||||||||||| || ||| || | |||||||| || ||||||||
Sbjct 14145 CGCCCGTCCAACCTGCGCGGCCGTCAGGGCGTTGTCGTGATCGACGAAGCCGCGTTCCAT 14204
Query 14755 GAGCAGCTCGGCGAGCTGCTCAAGGCCGCGATGGCGCTGCTGATGTGGGGCGGTCAGGTT 14814
| | | | | ||||||||| || || || ||||| ||| |||| ||||||||| | ||
Sbjct 14205 GCGGACTTGGCCGAGCTGCTGAAAGCTGCCATGGCTCTGTTGATCTGGGGCGGTGAAGTC 14264
Query 14815 CACATCATTTCGACGCACGACGGCGTCGACAACGCGTTCAATGAGCTGGTCACGGACGTC 14874
|| | || || |||||||| || ||| | ||||| || ||||||| || ||
Sbjct 14265 CATGTGATCAGCACCCACGACGGTACGGAGAACCCCTTCAACGACCTGGTCAACGAAATC 14324
Query 14875 CGTTCCGGCAAGAAGCCCTACAG-CCTGCATCGCATCACGTTCGCCGACGCAGTCCAGGA 14933
|| | |||||| || | | || ||| |||||||| || || || ||
Sbjct 14325 CGGGCAGGCAAG-CGCAATGGTGAAGTGTTCCGCTGCACGTTCGGTGAAGCCGTTGCTGA 14383
Query 14934 CGGGCTCTACCAGCGCATTTGCCTGCGCAAGGGCGAAGCCTGGACGGCCGAAGGTGAAGC 14993
|| || ||| |||| | |||||||| || ||| | | | | || | | ||
Sbjct 14384 TGGTCTGTACAAGCGTGTCTGCCTGCGTAAAGGCATTGAGTACAGGCTTGAGGATCAAAT 14443
Query 14994 CAAGTGGGTCAAGGA--TATTCGCGCGTCGTACGGCGCGGATGCTGAGGAAGAGCTGGAC 15051
| ||||| || || ||| || || || ||||||| | || || ||||| | |||
Sbjct 14444 CGCCTGGGTGAATGACGTATACG-GCTTC-TACGGCGATGCAGCCGACGAAGAATTAGAC 14501
Query 15052 TGCGTGCCGAAGAACAGCGGCGGCGCATGGCTGTCGC-GC---GCGCTGATCGAGTCGCG 15107
|||||||| | ||| || |||| || || | | || || ||| | ||| |||
Sbjct 14502 TGCGTGCC--ATCCCAG-GGTGGCG-GTGCCTTCCTCAGCATGGCCCTGGTTGAGCAGCG 14557
Query 15108 CATGTCGGC-TGACACGCCGGTGCTGCGCTGGGCCTGCAAACAGGGTTTCGAGGTGCTTC 15166
|| || | |||| |||||| |||||| ||| | | ||||||| ||| |
Sbjct 14558 CA-GTAATCGTGACGTGCCGGTACTGCGCCTGGCATACCCGCAGGGTTACGAAACCATCG 14616
Query 15167 CCGACCACATCCGCGCAGCCGAATGCCGCGATTGGCTCGAAGCGACGCTCGGCCCGCTGC 15226
|||| ||| | ||| ||||| | || || ||| ||||| | | ||| ||||
Sbjct 14617 CCGAACACTTGCGCCTGGCCGAGTCCCTGGAGTGGTGCGAAGAGCATTTGCTCCCTCTGC 14676
Query 15227 TCACGGCGCTCCCGGTCGACGCCCGCTCGTACAACGGCGAGGACTTCGGACGGACTGGCG 15286
| |||| | || | |||| | | | | ||| ||||||||| || | ||||
Sbjct 14677 TTTCGGCCATTCCCCTGGACGTTCAGAGCTTCTATGGCATGGACTTCGGGCGCTCCGGCG 14736
Query 15287 ACCTGACGGTCCACGTGCCGCTGATCGAACAACAGAACCTGGTTCGC---CGCGTGCCGT 15343
|||| ||||| | ||| || || || | ||||| ||| ||| ||| ||| |
Sbjct 14737 ACCTCTCGGTCTTCTGGCCATTGCTCAAAGAGCAGAATCTG---CGCAAACGCACGCCCT 14793
Query 15344 TCATCGTCGAGCTGCGCAACGTGCCGTTCCGGCAGCAGGAGCAGATCGCCTTCTACCTGC 15403
| | ||||||||||| ||||| |||||| ||| || ||||| || ||| |
Sbjct 14794 TTGTGGTCGAGCTGCGTAACGTCCCGTTCAAGCAACAACTCCAGATTAAGTTTTACATCA 14853
Query 15404 TTGATCGGCTCCCGCGCTTCACGGGCGGCGCCTTCGACGCGCGGGGCAACGGCCAATACC 15463
| ||| | || ||| |||||| |||||| ||||||||||| | |
Sbjct 14854 TCCGTCGCTTACCCAATTTCCTCAAAGGCGCCGACGACGCCAGGGGCAACGGCTCGCAAC 14913
Query 15464 TCGCAGAAGTCGCGATGCAG-CG-CTACGGC-GCATCGCGCATCCAGCAAGTGATGCTGT 15520
| | |||| | | ||| | || | |||| || | |||||| ||| ||||||||
Sbjct 14914 TGTCGGAAGACAC--TGCCGTCGAGTTCGGCTTCAAC-CGCATCGAGCGTGTGATGCTCA 14970
Query 15521 CCGAGTCGTGGTATCGCGAGCACATGCCGCCCGTGAAGGCGGCGTTCGAAGACGGCACGA 15580
||||| ||||||||||| ||||||| || | ||||| || | ||||| | |||
Sbjct 14971 CCGAGGGCTGGTATCGCGACAACATGCCACCGTTCAAGGCCGCCCTGGAAGATGACACCT 15030
Query 15581 TCGACGGCCTCCCGAAGGATGCCGACGTGCTCGCGGACCTGCGCGCCGTACAGGTCATCA 15640
|| ||| | ||||| || |||||| || ||| |||| ||| | | | | |||
Sbjct 15031 TCTACGACATCCCGGCCGACAAAGACGTGGTCAGCGACGTGCGTGCCTTTCGGATGGTCA 15090
Query 15641 AGGGCGTGCCGCGCATCCCGGA------CGTCCGCGCGACCGGCCAGGACGACGG---CA 15691
|||| ||| | ||||||||||| | | || || ||| | | | ||| ||
Sbjct 15091 AGGGTGTGGCCCGCATCCCGGAGAAACGCACCAACGAGAAAGGCGAAAAAGCCGGCCCCA 15150
Query 15692 AGCGCCACGGCGACGCCG 15709
||||||||||||||||||
Sbjct 15151 AGCGCCACGGCGACGCCG 15168
Score = 98.7 bits (108), Expect = 2e-16
Identities = 396/610 (65%), Gaps = 34/610 (6%)
Strand=Plus/Plus
Query 13338 TGCAGTACGTGCGCCGCGAAGACTACGTGCGCAACCAGACCGTCATCGAAGCCAAGCTCG 13397
|||| ||||||||||| ||||||||||||||| ||| ||||| ||||| |||||||| |
Sbjct 12824 TGCACTACGTGCGCCGGGAAGACTACGTGCGCGGCCAAACCGTGATCGAGGCCAAGCTTG 12883
Query 13398 ACGCGATCGCGCTCAGATTCGAAAACTTACAACTCCGGGGAAATCAATGACGCCCACCAA 13457
| ||| | || |||| | |||| | | ||| | ||| | ||| | ||
Sbjct 12884 ATGCGTTGGCCCTCAAGCTAGAAACCGTTCAATT-----AAAAGGACTGA-----AGTAA 12933
Query 13458 TCCGCTGGGAATCGACCACGCCAAGGTGCGCCGCGAATCGCTGCGCTGGTATCTGATTCT 13517
|| |||||| |||||| |||||| ||||| ||||||||||| | ||
Sbjct 12934 -----TGAACATCGACGCCGCCAAAACGCGCCGGGAATCCCTGCGCTGGTACATCATCAA 12988
Query 13518 GGCGCTGTACAACGCGCGGCCCGAGGAAGTCGTC--GAGGACGTGATCCAGATGACGATG 13575
| | ||| ||| | |||| |||| || || || |||| ||| | | || ||
Sbjct 12989 GACCCTGGACACCTCGCGCCCCGTAGA--TCCTCATGAGGCTGTGGTGTTGTCCACTATC 13046
Query 13576 CGCTCGATCTTCGCCGACATCACGGCGCTTGAGGTGCGCAAGGAACTGGACTACCTCGCC 13635
| |||| ||||| ||| | | ||| ||||| ||||| ||||| | |||
Sbjct 13047 CAAGGCATCTATCCCGACGCCACCACCATGGAGCTGCGCCGCGAACTTGACTATTTGGCC 13106
Query 13636 GATCGCGTGCTGGTGAAGCTGCGCAAGGAACCGTCCGGCCGCTGGTGGGGCGATCTCACG 13695
|| || ||||||| |||| ||| | || ||| ||| ||| || ||
Sbjct 13107 GACCGTAGCCTGGTGACGCTGGACAAAAAGCCCAACGGTGTGTGGATCTGCGGCCTGACC 13166
Query 13696 CGCTACGGCGTCGACATCGCCGAGTACACGATCGATTGCGAGCCGGGCATCGCGCGGCCG 13755
| |||||| ||||| || || || ||||| |||| ||| | || || | || || ||
Sbjct 13167 CACTACGGGGTCGATATTGCGGAATACACCATCGCCTGCAATCCAGGTGTTGCCCGTCCA 13226
Query 13756 GCCAAGTACTG--GAGCCAGTGACATGGGGCGCAGCAGCGGCGTGCAACGCCTGCCGAAG 13813
| |||||||| || || || | |||||||| || | || ||||||| |||
Sbjct 13227 GAAAAGTACTGGTGACCCTATGCC--CCCGCGCAGCA-AGGTGGCCA--GCCTGCCCAAG 13281
Query 13814 GCCGTGCGCGA-ATGGCTCGAAAGCGCGCTCGTCGAGGGCAACTTCACGGGCTATCAGGA 13872
| || | || |||||||| | || || | ||| |||||||| | || | |
Sbjct 13282 TCGGT-CAAGACCTGGCTCGACAAGGCCCTGGCCGAAAACAACTTCAGCGATTACGAAGC 13340
Query 13873 GCTGGAGCAAACG--CT-TCGCGACAAGGGCTACCAGATCAGCAAGTCGGCGATCCATCG 13929
||| || || | || ||| | | |||| | |||||||||||||||| | |||||
Sbjct 13341 CCTG--GCCAATGAACTGTCGAG-CCAGGGTTTTTCGATCAGCAAGTCGGCGCTACATCG 13397
Query 13930 GTACGGGCAG 13939
|| || |||
Sbjct 13398 CTATGGCCAG 13407
Score = 96.9 bits (106), Expect = 8e-16
Identities = 312/477 (65%), Gaps = 12/477 (3%)
Strand=Plus/Plus
Query 11989 TACCGCGCCGAGCTGACGCGCAACGCACGTGCCGTCTGGGGCATGGATGCGCCAGTCTCG 12048
|||||| ||| ||||| |||| ||| | | | |||||| ||||||| || || ||
Sbjct 11252 TACCGCCGCGACCTGACCCGCATCGCCCAGTCGGAATGGGGCCTGGATGCACCGGTATCC 11311
Query 12049 TCGTTCGCGGCGCAAATCCACCAGGAGAGCCGCTGGCGCGCGGACGC--CGTCAGCGTCG 12106
| ||||| || || ||||||||||| ||||||||| ||||| ||| || ||
Sbjct 11312 ACCTTCGCCGCTCAGATCCACCAGGAAAGCCGCTGGAAGTTCGACGCGAAGTC-GC-CCG 11369
Query 12107 TTGGTGCGCGCGGGATGTCTCAATTCATGCCCTCGACCGTCGACTGGATCGCGGGCGCCT 12166
| ||||||| || || || | ||||||||||||| | |||| | || | |
Sbjct 11370 TCGGTGCGCAAGGCTTGGGCCAGGTGATGCCCTCGACCGCCACCTGGCTTGCCGAGTTGT 11429
Query 12167 ATCCGGCCGAGCTGGGCGAGGCGCAGCCGTTCAACCCGTCCTGGTCGATTCGTGCGCTCG 12226
||| | || ||| ||| |||||| |||||| ||||| || | || || |
Sbjct 11430 TTCCCAAGGCTCTCGGCAAGGTCGAGCCGTATAACCCGGTTTGGTCCATGCAGGCACTTG 11489
Query 12227 TGCGGTACGACCGGCACCTCTGGGAGCGCATCACGGCGGCCGGTGCATGCGAGCGCATGG 12286
| | || ||||| || | | ||||||| |||| || | ||||| | ||
Sbjct 11490 TCAGCTATGACCGCTGGCTAGCGAACCGCATCAAGGCGCGTGGCCCCTGCGAACAAGGGG 11549
Query 12287 CGATGACGCTGTCGGCCTATAACGGCGGCCTGGGCTGGGTCTATCGCGATCAGCGCGTGA 12346
|| ||| || || ||||| |||||||| |||||||||| || | | | ||| |
Sbjct 11550 CGCTGATCCTTTCCGCCTACAACGGCGGTTTGGGCTGGGT-GAT--CAAAGACCGCAAGT 11606
Query 12347 CGGCTGCCGGC----GGCGCCGATCGGCAACGCTGGTTCGGCCATGTCGAGCGGTTCAAC 12402
||| |||| || ||||||| || ||||||| | ||||||||||||||
Sbjct 11607 TGGC-ATCGGCTAAGGGTGCCGATCCGCTGACCTGGTTCAACTCCGTCGAGCGGTTCAAT 11665
Query 12403 GCCGGCCGGCACGCGGCCGCTTTCCGCGAGAACCGCGGCTACCCGCGCGTGATTCTG 12459
|||||| || || || ||| || || || |||||||| |||| |||
Sbjct 11666 AACGGCCGCTCGGCTGCTGCGTTCAAGGAAAATCGTCAATACCCGCGTCTGATCCTG 11722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 117417019653260
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