Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq8416 203 8e-48 >seq8416 Length=35894 Score = 203 bits (224), Expect = 8e-48 Identities = 411/608 (68%), Gaps = 4/608 (1%) Strand=Plus/Minus Query 2577 CATGTCACACCCCCGCGATATCAAGAGGAATGGAGCGGTACTGGTCGGTGTCCCCGACCC 2636 ||| |||||| || || || || || |||| ||| |||||||| || || |||| Sbjct 6598 CATTTCACACACCTGCAATGTCGAGGCTGATGGGTTCGTATTGGTCGGTATCACCAACCC 6539 Query 2637 GCTCCTGGATACGCACGTACGCCTTGGTGCTCACGACCTGGACAGCCTCGCCGATGGCCT 2696 ||| | | || | ||| | ||||| || | |||||| || ||||| ||||||| Sbjct 6538 GCTGATACACGCGGATGTAGGACTTGGAGCCGATCACCTGGCAGGCGTCGCCAATGGCCT 6479 Query 2697 GCATTGCACGCTGCCAACGTTCGTCATCGATCTGCAGGCGGCGCAGGGCAAGCACGCTGC 2756 |||| || |||||||| ||||| || ||| | || ||||||| || || |||| | Sbjct 6478 GCATGGCGCGCTGCCAGCGTTCATCGGTGATTTCCATACGGCGCAACGCCAGGACGCGGG 6419 Query 2757 CGGTACGGATGTTCCCAGCTTGGTCCACGCGGAACGCATCGTTGATCAGCGTGATGACCT 2816 | || ||||||| || |||||| || || ||||| || | |||||||| || | Sbjct 6418 CTGTGCGGATGTCGCCCTTTTGGTCAGTCCGAAAGGCATCATTTACCAGCGTGACCACTT 6359 Query 2817 CCGCGCGAGCACCTTCCGTCCATTCGTGGAGGCACTCGTCGATCAGCGCCTTGGCCGCCT 2876 | | || || || | ||||| ||| | |||||||| || |||| || || |||| Sbjct 6358 CGGGACGTGCCCCGGCGGTCCAGTCGCGCAGGCACTCATCAATCAATGCACGCGCAGCCT 6299 Query 2877 GCAGGCGCTCGTCGAAGGCGATGTTGTCGGCCATGGCCCGAATGACCTTGTAGCGACCGT 2936 | ||||| |||||||| |||||| | || | || || |||| |||| | || || | Sbjct 6298 GGAGGCGTTCGTCGAAAGCGATGCTTTCCTGGACTGCGCGCATGATCTTGAAACGCCCAT 6239 Query 2937 CGAAGCTGACCAGAGAGGCGTTGCCCTTCTTGCCTCCTACCTTCGCCTGGTACTGCTCGG 2996 ||||||||| ||| | | || ||||||||||| || | || || ||||||||| | Sbjct 6238 CGAAGCTGATCAGGCTGACATTTCCCTTCTTGCCACCGATCTGGGCGCCGTACTGCTCAG 6179 Query 2997 CCGACAGGGT--GATGAAGGCTTCGATATCGCCGAATGTTGCCAGTTTGAAATCCAGCAA 3054 | || | || || |||||||||||||| ||||| | | ||||| | | || Sbjct 6178 C--ACTGAGTTCGACAAAGGCTTCGATATCACCGAAGGCCGAGGCCTTGAACTTCGCCAG 6121 Query 3055 CGCCTTGTTCAGAGCCTTCCCCTTGGCAACGATCTCCTGCACAAGGCGGTCGCGCTCCAG 3114 | | | | | ||| | || |||| | | | || ||| ||| |||||||| Sbjct 6120 CACATCGCTGGCAGCGCGGGCTTTTTCAACCAGGCCAAGTACCAGGGCGTCCCGCTCCAG 6061 Query 3115 GTCAATGGGCTTGATCATTTCTTCAGGTACCAGGCGCCCCTTGGCGTCCATGCGGTACCC 3174 ||| || || ||||||| ||| || | ||| ||| | ||||| | |||||| || Sbjct 6060 GTCTATAGGTTTGATCAGACTTTCCGGGATCAGCCGCTTTTGCGCGTCGACGCGGTAGCC 6001 Query 3175 GGCGGGAA 3182 |||||| Sbjct 6000 TTCGGGAA 5993 Score = 132 bits (146), Expect = 1e-26 Identities = 344/519 (66%), Gaps = 9/519 (2%) Strand=Plus/Plus Query 12138 CGGCCAAGGCCGATGAGATCCCGCGGGCC--GCCGAGCAGTATCGCCGCGTGCTGGTTCG 12195 ||||||||||||| |||||| | || || || | || ||||||| ||| || Sbjct 11217 CGGCCAAGGCCGAA---ATCCCG--GACCAGGCAGAACGCTACCGCCGCGACCTGACCCG 11271 Query 12196 AGCGGCGCATGCTGAGTGGGGACTGTCGGCGCCGATCGCTACGTTCGGTGCTCAAGTGCA 12255 || || | || ||||| ||| || ||| | | || |||| ||||| | || Sbjct 11272 CATCGCCCAGTCGGAATGGGGCCTGGATGCACCGGTATCCACCTTCGCCGCTCAGATCCA 11331 Query 12256 TCAGGAGAGCCGCTGGC-GTGCTGATGCCCGCTCGCCCGTCGGCGCACAGGGCCTGGCGC 12314 ||||| ||||||||| || | || || ||||||||||| || || ||| ||| | Sbjct 11332 CCAGGAAAGCCGCTGGAAGTTC-GACGCGAAGTCGCCCGTCGGTGCGCAAGGCTTGGGCC 11390 Query 12315 AGTTTATGCCCGGTACCGCTGAGTGGATCGCCGGCCTGTATCCGGCCGCCCTCGGCACCA 12374 || | |||||| ||||| ||| | |||| ||| ||| || ||||||| Sbjct 11391 AGGTGATGCCCTCGACCGCCACCTGGCTTGCCGAGTTGTTTCCCAAGGCTCTCGGCAAGG 11450 Query 12375 ACCAGCCGTTCAATCCAGGCTGGGCACTGCGCGCGCTGGTCACCTACGACCGTTGGCTCT 12434 | |||||| || || | ||| | ||| || || |||| ||| ||||| ||||| Sbjct 11451 TCGAGCCGTATAACCCGGTTTGGTCCATGCAGGCACTTGTCAGCTATGACCGCTGGCTAG 11510 Query 12435 ACGACCGAAACCAGGCCTCCAGCGAGTGTGATCGCTGGGCATTCGTACTGTCCGCTTACA 12494 |||| | | |||| || || || | |||| | | || ||||| |||| Sbjct 11511 CGAACCGCATCAAGGCGCGTGGCCCCTGCGAACAAGGGGCGCTGATCCTTTCCGCCTACA 11570 Query 12495 ACGGCGGCCAAGGGTGGGTAAATCGCGACCGTAAGCTGGCCTCGGCATCCGGCGCCGACC 12554 ||||||| || ||||| | ||||| ||| |||| ||||| || ||||| | Sbjct 11571 ACGGCGGTTTGGGCTGGGTGATCAAAGACCGCAAGTTGGCATCGGCTAAGGGTGCCGATC 11630 Query 12555 AGCTGGCCTGGTTCGATTCCGTCGAGCGCTTCAACGCCGGGCGCTCGGCCGCCAACTTCC 12614 |||| |||||||| | ||||||||||| ||||| ||| |||||||| || ||| Sbjct 11631 CGCTGACCTGGTTCAACTCCGTCGAGCGGTTCAATAACGGCCGCTCGGCTGCTGCGTTCA 11690 Query 12615 GCGAGAACCGCAACTACCCGCGCCTCATCCTGCTTCGCT 12653 || || || | |||||||| || |||||| | |||| Sbjct 11691 AGGAAAATCGTCAATACCCGCGTCTGATCCTGTTGCGCT 11729 Score = 122 bits (134), Expect = 2e-23 Identities = 286/433 (66%), Gaps = 8/433 (2%) Strand=Plus/Plus Query 13779 TGCCGATCCAGTACGTCCGCCGCGAGGACTATATCCGCGGCCAGAGCGTGATCGAGGCGA 13838 |||| | || ||||| ||||| || ||||| | |||||||| | |||||||||||| | Sbjct 12818 TGCCCGTGCACTACGTGCGCCGGGAAGACTACGTGCGCGGCCAAACCGTGATCGAGGCCA 12877 Query 13839 AGCTCGACGGTTTGGCCGTGAAGCTGGAAAACGCGCAGCTGCGCAGTCTGATGGGAGCAA 13898 |||| || | |||||| | ||||| |||| || || | | |||| | Sbjct 12878 AGCTTGATGCGTTGGCCCTCAAGCTAGAAACCGTTCAATTAAAAGGACTGAAGT------ 12931 Query 13899 AAAATGCAAATTGACCTGGCCAAGACCCGGCGCGAAGCCCTGCGCTGGCTGATTCTACTG 13958 |||| | || ||| ||||| || || || ||| ||||||||||| || | | Sbjct 12932 --AATGAACATCGACGCCGCCAAAACGCGCCGGGAATCCCTGCGCTGGTACATCATCAAG 12989 Query 13959 ACCCTGAACAATGCTCGGCCGGTGGGCGCCTACGAGGGGCCGGTCCTCTCGGTCGCACAG 14018 |||||| ||| | || || || | | | |||| ||| | || || Sbjct 12990 ACCCTGGACACCTCGCGCCCCGTAGATCCTCATGAGGCTGTGGTGTTGTCCACTATCCAA 13049 Query 14019 AGCGAGTACCCCGACGCCACACCGCTGGAGATCCGCCGCGAGCTGGACTACTTGGCCGAC 14078 || || ||||||||||| | ||||| | |||||||| || ||||| ||||||||| Sbjct 13050 GGCATCTATCCCGACGCCACCACCATGGAGCTGCGCCGCGAACTTGACTATTTGGCCGAC 13109 Query 14079 CGTGACCTGGTGACCTTGGTCAAGGAACCATCCGGCAAGTGGTTCGCCGATTTGACCCGG 14138 ||| ||||||||| ||| ||| | || ||| |||| || || |||||| Sbjct 13110 CGTAGCCTGGTGACGCTGGACAAAAAGCCCAACGGTGTGTGGATCTGCGGCCTGACCCAC 13169 Query 14139 TATGGCACTGACGTCGCCGAGTACACCATCGACTGCGAACCCGGCATCGCTCGCCCCAAG 14198 || || || | || || |||||||||| |||| | || || | || || || | Sbjct 13170 TACGGGGTCGATATTGCGGAATACACCATCGCCTGCAATCCAGGTGTTGCCCGTCCAGAA 13229 Query 14199 AAGTACTGGTGAC 14211 ||||||||||||| Sbjct 13230 AAGTACTGGTGAC 13242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122825687052706