Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq26061 134 2e-26 seq5074 109 7e-19 >seq26061 Length=1673 Score = 134 bits (148), Expect = 2e-26 Identities = 249/363 (69%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||||| |||||||||| || ||||| | ||||| || Sbjct 979 CAGGCGAAGTCGCAGTGCATGCCCTCGTCTCGGGAGATGTACTCGTTCGTGAACGTCAGC 920 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || ||||| || ||||| || || || ||| || || || |||||| Sbjct 919 CCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGATCGAGCAGAACGACCCGGAGAAGAAG 860 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATG 33479 || || || || || || || || | || ||||| | ||| ||| |||| | Sbjct 859 ATGCCCTCCACCGCTGCGAACGCGACGAGCCTCTCCGCG-AACGTGGCGGAGCTGCCG-- 803 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 |||||||| ||||| ||||||||||| | || || |||| ||| || || || Sbjct 802 -ATCCACTTGATGGCCCACTCGGCCTTCTTCGTGACGCACGGCACCGTCGAGATCGCCTT 744 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 || || || |||||| | | || | || || ||||| | ||||| ||| | Sbjct 743 GAACAGCGTGTCTTTTTCGGCGTTGTTCTTGATGTACGTGTCGATGAGCAGACTGTACGT 684 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || ||||| |||||||| || || ||||| || |||||||| || | ||||||| || Sbjct 683 CTCGGAATGGATGTTTTCGATCGCGATCTGGAACCCGTAGAAGCACCGGGCCTCGGGGAT 624 Query 33660 CTG 33662 ||| Sbjct 623 CTG 621 >seq5074 Length=2057 Score = 109 bits (120), Expect = 7e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 62330 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 62389 |||||||||| |||||||||| || |||||||| ||| || | |||| ||||| || Sbjct 1553 ATTAACTACTGGAAATTCTCCCGATAATACTCTACGAAGATATACATTAGAAGTATAAGG 1494 Query 62390 TTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62449 ||| | | || |||||||||| || || ||| ||||| || ||||| ||||| | Sbjct 1493 TTCGAAACATTCGTTATTTCCCAGGATAATAGAAGTAGATGCTGTGGGCATTGGTGCGAT 1434 Query 62450 CAATAAACTATTTCTAAGACCGTATGTTCTGATTTTAT 62487 ||||||||||||| |||| || | | | |||||| || Sbjct 1433 CAATAAACTATTTTTAAGTCCATGTTTCTTGATTTCAT 1396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622640297275080