Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq29849 111 1e-19 seq21875 91.5 1e-13 >seq29849 Length=3363 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 |||||||||| | ||||| || ||| | || || || |||| || ||||||||||| | Sbjct 1276 CAAAATGCAAATTTTTGTGAAGACACTGACCGGCAAGACGATCACTCTCGAAGTCGAGTC 1217 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||||||| || ||| | || || ||||| ||||| |||||||| || || || Sbjct 1216 CAACGACACGATTGAGAACGTGAAGTCGAAGATCCAGGACAAGGAAGGCATCCCGCCTGA 1157 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| || |||| | || || ||||||||||| || | | | | | ||| || Sbjct 1156 CCAGCAGCGATTGATCTTCGCAGGAAAGCAACTCGAGGACGGTCGCACCCTTGCCGACTA 1097 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||||||||| || || || Sbjct 1096 CAACATTCAAAAGGAGTCGAC 1076 >seq21875 Length=4161 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || || || | || || || |||| ||| | || || ||| | Sbjct 446 AAGATGCAGATTTTCGTGAAGACCCTGACCGGGAAGACGATCACCCTTGAGGTGGAGTCA 387 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||| |||||| | || || ||||| ||||| ||||| || || ||||| Sbjct 386 AACGACACGATCGAGAATGTGAAGTCTAAGATCCAGGACAAGGAAGGGATCCCGCCCGAC 327 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||||||||| | || ||| ||||| ||||| || | ||||| | ||| || Sbjct 326 CAGCAGAGACTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACGCTGGCCGACTAC 267 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 266 AACATCCAGAAGGAGTCCAC 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429729481989015