Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq29849 149 6e-31 seq26061 147 2e-30 seq34640 118 1e-21 seq21875 109 5e-19 seq2393 98.7 9e-16 >seq29849 Length=3363 Score = 149 bits (164), Expect = 6e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | || | |||||||||||||||||||||||| ||| | |||||| | Sbjct 1058 CGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGACCG 1117 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| || ||||| |||||| |||| || ||||||||||| || ||||| ||||| ||| Sbjct 1118 TCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 1177 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| ||| ||| | | ||| | || ||| ||||||||| |||| || | Sbjct 1178 TCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGACTCGACTTCGAGAGTGATC 1237 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| || || || || ||||| ||||| Sbjct 1238 GTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCAT 1272 >seq26061 Length=1673 Score = 147 bits (162), Expect = 2e-30 Identities = 363/536 (68%), Gaps = 15/536 (3%) Strand=Plus/Plus Query 46057 GACACGCTGCTTAATGCGTT-TGAACGTATGCCGTGCGTGCGCAAGAAAACCGACTGGGC 46115 ||||||||| | || ||| | | ||| |||||||||| ||||| |||| ||||| Sbjct 732 GACACGCTGTTCAAGGCGATCTCGACGG-TGCCGTGCGTCACGAAGAAGGCCGAGTGGGC 790 Query 46116 GATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGAT 46175 || ||||||||| ||||| |||| || ||||| ||| | | || || || || Sbjct 791 CATCAAGTGGATCG---GCAGCTCCGCCACGTTCGCGGAGAGGCTCGTCGCGTTCGCAGC 847 Query 46176 TGTGGAGGGCGTCtttttttCTGGCA-GTTTTGCCGCCATCTTTTACATCAA-AACCAAG 46233 ||||||||| |||| || || || ||| ||| | ||||| | | || || | | Sbjct 848 GGTGGAGGGCATCTTCTTCTCCGGGTCGTTCTGCT-CGATCTTCTGGCTGAAGAAGCGGG 906 Query 46234 GGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCAT 46293 ||| | ||||| || |||||||| | |||||| || || || ||||||||| |||| Sbjct 907 GGC-TGATGCCGGGGCTGACGTTCACGAACGAGTACATCTCCCGAGACGAGGGCATGCAC 965 Query 46294 ACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCCCGACACC 46353 ||||| || || || ||| |||| | || | || ||| || | || | | | Sbjct 966 TGCGACTTCGCCTGCCTGCTCTACAACAAGCTCGAGTAC-ACACGCCTCAGCAGGG-AGC 1023 Query 46354 GTGCTGAGCA--TGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCAC 46411 ||| | | | || | |||||| || ||||| |||||||||||| | |||| ||||| Sbjct 1024 GTGTGGTGGAATTGCTTGCGGAGGCTGTAGCCATCGAGAAGGAGTTTGTAACGGACGCAC 1083 Query 46412 TGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCG-ACTACATCGAGTTTGTA 46470 |||| | ||| | || |||||| | ||| ||| | ||||||||||| || Sbjct 1084 TGCCGGTCAAGCTGATCGGGATGAACAGCGACCTGATG-GCGAAGTACATCGAGTTCGTG 1142 Query 46471 GCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCGCGCAATCCATTT 46530 ||||||||| ||||| || | | |||| | | || || || || || Sbjct 1143 TGCGACCGACTGTTCGTGACTCTCGGCTACGAGAAGTACTACAACACGGCGAACCCGTTC 1202 Query 46531 GAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGT 46586 || || ||| | |||||||||| | ||||| || || || |||||||||||||| Sbjct 1203 GACTTCATGGAGCTCATCTCCCTGCAAGGCAAGACAAACTTCTTCGAAAAGCGCGT 1258 >seq34640 Length=3269 Score = 118 bits (130), Expect = 1e-21 Identities = 172/240 (72%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | ||||||||||| || |||||||| || | | Sbjct 1116 CCACCACGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-CGC 1174 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | |||||| |||||||| || ||| |||| || ||||||||||| || || Sbjct 1175 AAGCGTCCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGG 1234 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||| | | ||| | || || | ||||||| Sbjct 1235 GATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGAC 1294 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA---TGACTTATTT 131243 |||| || | || || || || || || || ||||| ||||||| || ||||||| Sbjct 1295 CTCGAGCGTGATTGTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCATCTTGGCTTATTT 1354 >seq21875 Length=4161 Score = 109 bits (120), Expect = 5e-19 Identities = 167/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 130999 CACCATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTT 131057 || ||||| |||||| || | | || || | || | ||| |||||||| || ||||| Sbjct 207 CATCATGACGCCACCACGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTT 266 Query 131058 GTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTG 131117 ||| ||| || || | |||||| |||||||| || ||| |||| | | |||||| Sbjct 267 GTAGTCGGCCAGCGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTG 326 Query 131118 GTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGT 131177 ||| || ||||| ||||| ||||| ||| || ||| | | ||| | || ||| | Sbjct 327 GTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTT 386 Query 131178 GGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| | || | ||| | || || ||||| || || || |||||||||||||| Sbjct 387 TGACTCCACCTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 443 >seq2393 Length=4323 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| || || || | || | ||| |||||||| || |||||||| || | Sbjct 897 CCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 956 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || |||| |||||||||||| |||| | || ||||||||||| || Sbjct 957 AGAGTCCTGCCA-TCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGG 1015 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || ||| ||| | | || | ||||| | ||||| | Sbjct 1016 GATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCAC 1075 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || |||||||| || || |||||||| Sbjct 1076 CTCAAGGGTGATAGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 1123 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| || || || | || | ||| |||||||| || |||||||| || | Sbjct 1929 CCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 1988 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || |||| |||||||||||| |||| | || ||||||||||| || Sbjct 1989 AGAGTCCTGCCA-TCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGG 2047 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || ||| ||| | | || | ||||| | ||||| | Sbjct 2048 GATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCAC 2107 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || ||||| || ||||| |||||||| Sbjct 2108 CTCAAGAGTAATAGTCTTGCCTGTGAGAGTCTTAACGAAGATCTGCAT 2155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471780256993920