Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq29849 96.9 3e-15 seq21875 95.1 1e-14 seq2393 91.5 1e-13 seq34640 84.2 2e-11 >seq29849 Length=3363 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | || || || ||||||||||| |||||||||||||| Sbjct 1046 CCACCTCTGAGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCA 1105 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||| | ||| || || || | || | ||||| ||||| || Sbjct 1106 AGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGGCGGG 1165 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| || | | |||||| | | | |||||| || ||| | Sbjct 1166 ATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGACTCGACT 1225 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||| || || |||||||| || || |||||||| ||||||||| Sbjct 1226 TCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCATTTTG 1276 >seq21875 Length=4161 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || |||| |||| || || ||||||||||| || ||||||||||||||| Sbjct 217 CCACCACGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 276 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || ||||||| | || || || || | || || | ||| ||||| || Sbjct 277 AGCGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGG 336 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| || | |||||| | | | |||||| | |||| Sbjct 337 ATCCCTTCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACC 396 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | |||||| || || |||||||| || || || ||||||||||| || Sbjct 397 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCATCTT 446 >seq2393 Length=4323 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || |||||||| || ||||||||||| ||| Sbjct 897 CCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 956 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || || | || || || || ||||| ||| | || || || || |||||| || Sbjct 957 AGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGG 1016 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | | |||||| | | | || || | |||| Sbjct 1017 ATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACC 1076 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||| || || || || || ||||| ||||| ||||||||| Sbjct 1077 TCAAGGGTGATAGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCATT 1124 >seq34640 Length=3269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||||| |||||||| || ||||||||||| || | || || ||||| Sbjct 1131 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCCGTCC 1190 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || || | || | |||||| ||||| || | |||||| ||||| Sbjct 1191 TCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 1250 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | |||||| | | | ||||| | ||| || | ||||| || Sbjct 1251 TGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGATTGTC 1310 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || ||||| || || || || |||||||| ||| Sbjct 1311 TTGCCCGTCAGGGTCTTAACGAAGATCTGCATCTTG 1346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404893417624870