Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_008204.1 Length=67188 Score E Sequences producing significant alignments: (Bits) Value seq220 118 5e-22 seq13808 104 1e-17 >seq220 Length=1366 Score = 118 bits (130), Expect = 5e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 41669 TTCCTGGCGCAGGTCGGCCACGAGTCCGGCGGCCTGAAATACCAGGAGGAGATCGCCTCC 41728 ||| | || ||||| ||||||||||||| ||||||| ||| || || || || || Sbjct 460 TTCGTCGCACAGGTGGGCCACGAGTCCGTCGGCCTGCGGTACTTCGAAGAAATTGCGTCG 401 Query 41729 GGTGCGGCGTACGAAGGCCGGGCCGACCTCGGCAACACCCAGCGCGGCGACGGCGTGCGG 41788 || | || |||||||||||| ||||| |||||||| |||| || |||||| |||| Sbjct 400 GGGTCAGCTTACGAAGGCCGGAGAGACCTGGGCAACACACAGCCAGGGGACGGCAGGCGG 341 Query 41789 TTCAAGGGACGCGACTTCATCCAGATCACCGGGCGGTCCAACTAC 41833 ||||| ||| | | | ||||||| |||| || ||||| |||||| Sbjct 340 TTCAAAGGAAGAGGCCCCATCCAGCTCACGGGACGGTCGAACTAC 296 >seq13808 Length=6157 Score = 104 bits (114), Expect = 1e-17 Identities = 123/166 (74%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 41668 TTTCCTGGCGCAGGTCGGCCACGAGTCCGGCGGCCTGAAATACCAGGAGGAGATCGCCTC 41727 ||||| ||||||||||||||||| || |||||| ||| || || |||| || Sbjct 5039 TTTCC--GCGCAGGTCGGCCACGAATCGACAGGCCTGCTGTACTTCGAAGAACTCGCGTC 5096 Query 41728 CGGTGCGGCGTACGAAGGCCGGGCCGACCTCGGCAACACCCAGCGCGGCGACGGCGTGCG 41787 ||||| || ||||| ||| || | |||||||| ||||| || ||| ||||| ||| Sbjct 5097 GGGTGCTGCATACGAGGGCAGGACTGACCTCGGTAACACGCAAACCGGGGACGGAAAGCG 5156 Query 41788 GTTCAAGGGACGCGACTTCATCCAGATCACCGGGCGGTCCAACTAC 41833 ||||||||||| | | |||||| |||| || |||| ||||||| Sbjct 5157 TTTCAAGGGACGAGGCCCAATCCAGCTCACGGGACGGTACAACTAC 5202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 214773584802057