Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2393 122 7e-23 seq29849 96.9 3e-15 >seq2393 Length=4323 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||||||||| || || ||||| ||| | || || || || | |||||||| ||||| | Sbjct 2159 AAAGATGCAGATCTTCGTTAAGACTCTCACAGGCAAGACTATTACTCTTGAGGTGGAGTC 2100 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | |||||| | || || | || || ||||| ||||||||||| || || || || Sbjct 2099 GAATGATACCATCGAAAATGTGAAGTCGAAGATTCAGGACAAGGAGGGGATCCCGCCGGA 2040 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || ||||| || || ||||| ||||| |||||||| ||| | | || | | || || Sbjct 2039 CCAGCAACGACTCATCTTTGCAGGCAAGCAGTTAGAAGATGGCAGGACTCTGGCTGACTA 1980 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| || || || || ||| | || | ||| | || ||||||||||| Sbjct 1979 CAACATCCAGAAGGAGTCTACCCTTCACCTGGTTCTCCGCCTGCGCGGAGGT 1928 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||| | || || || || |||| ||||| ||||| | | Sbjct 1123 ATGCAGATCTTTGTGAAAACTCTTACTGGCAAGACTATCACCCTTGAGGTGGAGTCGAAT 1064 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || ||||| ||||||||||| || || || || || Sbjct 1063 GATACCATCGAAAATGTGAAGTCGAAGATTCAGGACAAGGAGGGGATCCCGCCGGACCAG 1004 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| ||||| |||||||| ||| | | || | | || |||||| Sbjct 1003 CAACGACTCATCTTTGCAGGCAAGCAGTTAGAAGATGGCAGGACTCTGGCTGACTACAAC 944 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || ||| | || | ||| | || ||||||||||| Sbjct 943 ATCCAGAAGGAGTCTACCCTTCACCTGGTTCTCCGCCTGCGCGGAGGT 896 >seq29849 Length=3363 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/225 (70%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 22210 TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG 22269 |||| ||| |||||||||||||| || || | ||||| || ||| ||||||| ||||| Sbjct 1280 TTTGCAAA-ATGCAAATTTTTGTGAAGACACTGACCGGCAAGACGATCACTCTCGAAGTC 1222 Query 22270 GAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCA 22329 || ||| ||| || | || | | || || || || |||||||| || || || Sbjct 1221 GAGTCCAACGACACGATTGAGAACGTGAAGTCGAAGATCCAGGACAAGGAAGGCATCCCG 1162 Query 22330 CCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCC 22389 || || || || || | || || || || || || | ||||| |||||| | || Sbjct 1161 CCTGACCAGCAGCGATTGATCTTCGCAGGAAAGCAACTCGAGGACGGTCGCACCCTTGCC 1102 Query 22390 GATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 || |||||||||||||| || || ||| | || | || ||||| Sbjct 1101 GACTACAACATTCAAAAGGAGTCGACCCTCCACCTTGTGCTGCGA 1057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419526385360345