Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq26061 116 8e-21 >seq26061 Length=1673 Score = 116 bits (128), Expect = 8e-21 Identities = 265/390 (68%), Gaps = 9/390 (2%) Strand=Plus/Minus Query 251562 TTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGT 251621 ||||||||| || | |||||| | ||| ||||| ||||||||||||||||| ||||| | Sbjct 1250 TTCGAAGAAGTTTGTCTTGCCTTGCAGGGAGATGAGCTCCATGAAGTCGAACGGGTTCGC 1191 Query 251622 GGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| | ||| | ||| || | ||||| | ||||| ||| ||||| | Sbjct 1190 CGTGTTGTAGTACTTCTCGTAGCCGAGAGTCACGAACAGTCGGTCGCACACGAACTCGAT 1131 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGA 251740 |||| ||||||| || |||||| || |||| ||| || | ||| || | Sbjct 1130 GTACTTCGCCATCAGGTCGCTGTTCATCCCGATCAGCTTGAC-CGGCAGTGCGTCCGTTA 1072 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTCCTCCA-CAATTGC-CTTCAC---CTGTGCCAG 251795 || ||||| ||| |||| || |||||| | | ||||| | | ||| | || | | Sbjct 1071 CAAACTCCTTCTCGATGGCTACAGCCTCCGCAAGCAATTCCACCACACGCTCCCTG-CTG 1013 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 || | | ||| ||| ||||| ||| || || | | || | ||||| ||||| Sbjct 1012 AGGC-GTGTGTACTCGAGCTTGTTGTAGAGCAGGCAGGCGAAGTCGCAGTGCATGCCCTC 954 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 ||| || |||| ||||||| | | ||| || ||||||| ||| || ||| | || Sbjct 953 GTCTCGGGAGATGTACTCGTTCGTGAACGTCAGCCCCGGCATCAGCCCCCGCTTCTTCAG 894 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 ||||||||| | ||| || || || ||||| Sbjct 893 CCAGAAGATCGAGCAGAACGACCCGGAGAA 864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027317763936333