Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_008717.1 Length=36415 Score E Sequences producing significant alignments: (Bits) Value seq8416 259 1e-64 >seq8416 Length=35894 Score = 259 bits (286), Expect = 1e-64 Identities = 271/356 (76%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 1440 AAAGACGACCGCACCCTGGACATCTTCGATGTTCCGCAGCCAGCCCGCGCTATACCCGGC 1499 ||||| ||| | || | ||||||||| |||||||||||| | | |||||||||| Sbjct 1466 AAAGATGACAGAACATTAGACATCTTCTCTGTTCCGCAGCCGGTGCTTTCTATACCCGGT 1525 Query 1500 GAGTGCAACTATGCCGCCCAGGTCAGCGAGCTGGTCAGCGAAATTCTGAAGGCCGCCAAC 1559 | |||||||||||||||||||||||||||||||||||||| | || || | || || Sbjct 1526 CACGGCAACTATGCCGCCCAGGTCAGCGAGCTGGTCAGCGAAGTCCTCAAAGAGTCCGAC 1585 Query 1560 CTCGACCGTTACGAGGTCGCCGCCCGCATGTCGCGCCTATCTGGCGATGACGTGAGCAAG 1619 | ||||| || ||| | || || |||||||| ||||| || ||||| ||||| |||||| Sbjct 1586 TTGGACCGCTATGAGATTGCGGCTCGCATGTCACGCCTTTCGGGCGACGACGTTAGCAAG 1645 Query 1620 AACATGCTCGACGCCTGGTCGAGTCCCGCCCGAGCTGATCACAACTTGCCTTTCTACCGC 1679 |||||| | ||||||||||| ||||| ||||| || ||||||||| | ||| | || || Sbjct 1646 AACATGTTAGACGCCTGGTCAAGTCCTGCCCGTGCAGATCACAACCTACCTCTGTATCGA 1705 Query 1680 GCCGCCCTCCTGGAGGACGTCTGCGCGAGCCACCTGCTGACCAACTGGCTGGTCGATGTG 1739 || || | |||||||| ||||| || ||||| | ||||| || |||| || | || Sbjct 1706 GCTGCTTTGCTGGAGGAAGTCTGTGCAAGCCATGTCCTGACGAATTGGCAAGTACACCTG 1765 Query 1740 CGGGGCGGCCGCGTGGCCTATGGCCGAGACGCACTGCTCGCCGAGCTGGGCCGCCT 1795 || || ||||| || || ||||| || || || ||| ||| || | || ||||| Sbjct 1766 CGCGGTGGCCGGGTCGCTTATGGGCGCGAGGCTCTGGACGCGGAAATAGGTCGCCT 1821 Score = 154 bits (170), Expect = 3e-33 Identities = 141/174 (81%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 8926 CGGCCAAGAACCGCA--CCGTCCACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCT 8983 |||||| |||| | || | |||| ||||||||||||||||| || | |||||||||| Sbjct 8662 CGGCCAGGAACAACTTGCCCTGCACTAAGCGAAACCGCCCCGGCGTG-CTGGGACGGTCT 8720 Query 8984 GCCGGACGTGGTGGTCCGGTACTGATGAGCAGCCACCCATGACGAACGAA--ACCAAGAC 9041 |||||||||||| |||||||||||||||||||||||||||||| ||||| ||| | || Sbjct 8721 GCCGGACGTGGTTGTCCGGTACTGATGAGCAGCCACCCATGACAGACGAAACACCCAAAC 8780 Query 9042 AGACCGCCAGCGCCGCCTGGCGCGGGAACGCCAACGAGCGAAGCGCGAGCGCGA 9095 || ||||| ||||||||| || ||||| |||| || |||| ||||||| Sbjct 8781 AG--CGCCAAACCCGCCTGGCACGCGAACGTAAACGTGCCCAGCGTAAGCGCGA 8832 Score = 131 bits (144), Expect = 4e-26 Identities = 318/473 (67%), Gaps = 29/473 (6%) Strand=Plus/Plus Query 2777 GCATGAAATAAAGGCGCTGCGCCCGTTCATTCGCCGCGACTTCACCAAGTTGCTG---CC 2833 ||| ||| | || || |||| || |||| |||||| | ||||||| || || Sbjct 2615 GCAGGAACTCAAAGCCCTGCAACCATTCAAGCGCCGC---TCCACCAAGAGCATGTACCC 2671 Query 2834 GACCGACGTCTATTCCTGCGACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCA 2893 | |||||| | || ||||||||||| ||| || || ||||| | |||| | ||| Sbjct 2672 GTGCGACGTATTCACCGCCGACGGCCACAAGTTTGATGCAGAGGTATTGAACCC-ACGCA 2730 Query 2894 C-GGCCGGCCTTTCCGGCCGGAAATCACCACCATCATTGACATCCGTACCCGCCGCATTC 2952 | ||| ||||| ||| |||||| |||||| || | || || ||| ||| | | Sbjct 2731 CCGGCAAGCCTTACCGCCCGGAAGCAACCACCGTCCTCGATGTCGCTACTCGCA--AGGC 2788 Query 2953 CG--GGATGGTCCACCGGCCTGGCCGAGTCGGCCCTGGTGGTGGTCGATGCCCTGCGCGA 3010 || || |||| || ||||||||| || | | || | || |||||||| || Sbjct 2789 CGTGGGTATTTCCATTGGTGAGGCCGAGTCCACCATCGGCGTTATGGACGCCCTGCGTGA 2848 Query 3011 CGCC-TGCACCAAGGGCGGCATCCCGGCCATCTTCTACGTTGACAACGGCTCGGGCTACG 3069 |||| |||| || |||||| || | ||||||||||||||||| || |||| | Sbjct 2849 CGCCATGCAGCA----CGGCATGTTTGCGGTGTTCTACGTTGACAACGGTTCCGGCTTTG 2904 Query 3070 TCAACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGATATGA 3129 |||| ||| | || || | | ||| || | | ||| |||| ||||| Sbjct 2905 CCAACGACACCGTACGTGAAGTAG---TCGACCGTCTCGGC------GGCAC---TATGA 2952 Query 3130 AGAACAGCCTGCCCTACAACAGCCAGGCGCGGGGCGTGATTGAGCGCGTCCACCAGAGCC 3189 | | ||||||||||||||||||| || ||| | |||||||| |||||| | Sbjct 2953 CCCATGCCTTGCCCTACAACAGCCAGGCCCGCGGCCTCATTGAGCGTTCCCACCAAACGA 3012 Query 3190 TGTGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGAC 3242 | ||| | || |||||| | ||| || ||||||||||||||||||||||| Sbjct 3013 TTTGGGTCAATGCAGCCAAGAAGCTGACCAGCTACATCGGCGCCGACATGGAC 3065 Score = 109 bits (120), Expect = 1e-19 Identities = 221/322 (69%), Gaps = 11/322 (3%) Strand=Plus/Plus Query 9342 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9401 || ||||||||||||||| | || || |||| ||||| ||||| ||||| ||| | Sbjct 9061 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGATGAAACCTACCGCGCCTTGTTG 9120 Query 9402 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATTGACCAGGTA 9461 | ||||| || | ||||| |||||||| || | ||| |||||||| | | |||| Sbjct 9121 GGCCGCGTGGCAGATGTGCGTTCGGCCAAAGATCTGACGCCACGCCAGATCGGCGCGGTA 9180 Query 9462 CTGGTCGAACTCCAGCGTCTGGGCTGGAAAC---CGAAGAGCAACCGGCAAGGCCGGGCG 9518 |||| ||| || || ||||||||| | | | ||| || |||||| | || Sbjct 9181 CTGGCCGAGTTCGCTCGCCTGGGCTGGGAGCCTACAAAGGCTAAAAAGCAAGG--GCGCA 9238 Query 9519 ACGCCAAAAGTGCCG---CAAAACCG-GCAAACCGTGCTGCGCAAAATCACCGCGCTCCT 9574 | | || |||| || | | |||| | ||| | || || | ||||| || | || Sbjct 9239 AAG-CACCAGTGGCGGCTCCAGACCGTGTAAAAC-TGGTGGGGAAAATAGAGGCCTTTCT 9296 Query 9575 GGCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCATATGGCCCGGCGCATGTTCCAGGT 9634 || || | || ||||| ||| |||||| |||||||| |||||||||| |||| Sbjct 9297 CTCCGAGGCAAAGCGTTCCTGGGCCTATGCCGACGGTATGGCCCTGCGCATGTTCAAGGT 9356 Query 9635 CGAGCGGGTCGAGTGGCTGGAC 9656 ||| || ||||| ||||| ||| Sbjct 9357 CGAACGCGTCGAATGGCTAGAC 9378 Score = 84.2 bits (92), Expect = 5e-12 Identities = 228/348 (66%), Gaps = 6/348 (2%) Strand=Plus/Plus Query 245 CATGTCCTTATACGCCTTGTTTTCGCTGATGATCGCGATAGAGCCATCG---AACTGCCG 301 |||| || ||| ||| |||| ||||||| | || | |||| || | ||| || Sbjct 323 CATGGTCTGATAAGCCGCGTTTGCGCTGATAACTGCTAC---GCCACCGCCAATCTGGCG 379 Query 302 TTGTAAGCGCTTGGCGTAGAGCTGATCCCCGACCCGAATCACATAGATCGCTTCATCCCG 361 ||| | ||||||||||| || || || | | ||||| || ||||| ||||| | Sbjct 380 TTGCAGCCGCTTGGCGTACAGATGGTCATCCAAGCGAATAACGTAGATGGCTTCCCCTTC 439 Query 362 CACGGTTCTAAGGTCATGGTCGATAACAACGGCGTCGCCATCCGACAGGAGGGGTTCCAT 421 || | | | | |||||||| | || | ||||||||| ||| | ||||| Sbjct 440 CAGGCTGTTGCGACTGTGGTCGATCAACACAGTGTCGCCATCACTCAGCACCCCCTCCAT 499 Query 422 GGAGTCGCCCCCGACCCTTACTGCCGACATCCTGGTTGGCTCTAACCCCTTCTTGCTCAA 481 ||||| || | |||| | ||||| | | | | ||||| || |||| ||||| ||| Sbjct 500 AGAGTCACCGTCCACCCGGATAGCCGAGAGCTTCGACGGCTCCAATCCCTGCTTGCGCAA 559 Query 482 GCTGTAGCGCGTAAAGGCAAGCTGCGTAAGAACGTGTGCGCCTTCGCTCCAGCTTCCATG 541 ||| ||||| || || ||||||||||| | || || || |||| || || Sbjct 560 TGAGTAAGTGGTAAAAGCCAGGTGCGTAAGAACCCGAGCCCCCTCTGTCCATGCCCCGTG 619 Query 542 TCCCGCGCTGACCCTCGCGTCATACAGGGGGACGTAGACATATTGGTC 589 || || ||| | ||||| || |||||||| ||| |||| ||| Sbjct 620 ACCGGCACTGCAACGAGCGTCGTAAAGGGGGACATAGCTGTATTTGTC 667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116351918385362