Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq17960 197 3e-45 seq21875 167 4e-36 seq2393 165 2e-35 seq26061 158 2e-33 seq34640 150 3e-31 seq29849 118 2e-21 seq705 84.2 4e-11 >seq17960 Length=1098 Score = 197 bits (218), Expect = 3e-45 Identities = 360/519 (69%), Gaps = 6/519 (1%) Strand=Plus/Minus Query 268195 GACAGAATACTGGACCCCAGTTGCAATCACAAAGTCCTCTGGCT-CAGGAGACTGGAGCA 268253 ||| || | ||| | || ||||| | |||||||||| |||| | || ||| || | Sbjct 772 GACGGAGTGCTGCTCGCCGGTTGCGAGCACAAAGTCCA-TGGCGACTGGGTGCTGCAGGA 714 Query 268254 TTTTCCACATTGCTTCG-ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATG 268312 | ||||||| || || || |||||| ||| || ||||| |||||||| ||||| ||| Sbjct 713 TCATCCACAT-GCCGCGCACGTAGTCCTTCGCGTGCCCCCAGTCGCGCTTCGCGTCGATG 655 Query 268313 TTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGAC-CGCGAGTGAT 268371 ||||| || | ||| |||||||||| | | ||| | | | ||| | | || || Sbjct 654 TTCCCCAGCAGCAGCTCTTTCTGCTTGTCCATCTTGATGTG-GCACGCGGCTCGCACAAT 596 Query 268372 TTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTT 268431 || | |||||||||||| | || | | ||||||||||||||||| ||||| ||||| Sbjct 595 CTTCTGCGTCACGAACGTCGCTCCCCTCCGCGGGCTCTCGTGGTTGAACAGGATCCCGTT 536 Query 268432 GCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTT 268491 ||||||||| | || ||| | ||||||||| ||||||| | ||| ||| Sbjct 535 CGTTGCGAACATGTCGTAGCTCTCCCTGTAGTTCACCGTGATCCAGTACCCGTACAGCTT 476 Query 268492 TGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCG 268551 | || |||||||| || || || | || |||||||| | | || || | || Sbjct 475 CGAGACCGCGTACGGCGAGCGCGGGTAAAACGGCGTCGTTTCCGTCTGCGGCACCTCGAC 416 Query 268552 GACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACC 268611 || || || | ||||| || ||||| |||||||||||| || | || ||||| || Sbjct 415 AACCTTCCCGTACAGCTCCGACGTCGACGCTTGGTAGAACCGCGTCTTCTTCTCGAGCCC 356 Query 268612 GCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATA 268671 ||| | ||||| || || | ||| | |||| || || | | ||| || || Sbjct 355 GCAACTCCGGATGGCTTCCAACAACTTCAACACACCCACACCGTCAGCTTGCGCGGTGTA 296 Query 268672 CTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGC 268710 ||||||||||||||| ||||| | || ||||||||||| Sbjct 295 CTCCGGCATCTCGAACGACACTTTCACGTGGCTCTGGGC 257 >seq21875 Length=4161 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || | ||| |||| ||| || |||||||| || |||||||| || |||| Sbjct 217 CCACCACGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 276 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || || || || | |||||| |||||||| || ||||| || |||||||| || Sbjct 277 AGCGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGG 336 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| | ||| || |||||| ||||| ||| || || Sbjct 337 ATCCCTTCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACC 396 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || || |||||||| ||||| |||||||| Sbjct 397 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 443 >seq2393 Length=4323 Score = 165 bits (182), Expect = 2e-35 Identities = 183/243 (75%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| ||||| | |||| ||| || || ||||| || |||||||| || || | Sbjct 1929 CCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 1988 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || ||||| ||||||||||||||||| || || || ||||||| ||| ||||| || || Sbjct 1989 AGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGG 2048 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||| || |||||||| || || || || Sbjct 2049 ATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACC 2108 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT-TATGCTATTATA 68473 || | || || || || || ||||| ||||| ||||| |||||||| | | || || || Sbjct 2109 TCAAGAGTAATAGTCTTGCCTGTGAGAGTCTTAACGAAGATCTGCATCTTTCCTCTTTTA 2168 Query 68474 CCC 68476 ||| Sbjct 2169 CCC 2171 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| ||||| | |||| ||| || || ||||| || |||||||| || || | Sbjct 897 CCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 956 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || ||||| ||||||||||||||||| || || || ||||||| ||| ||||| || || Sbjct 957 AGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGG 1016 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||| || |||||||| || || || || Sbjct 1017 ATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACC 1076 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||| || || || || || || || || || ||||||||| Sbjct 1077 TCAAGGGTGATAGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCATT 1124 >seq26061 Length=1673 Score = 158 bits (174), Expect = 2e-33 Identities = 579/897 (65%), Gaps = 40/897 (4%) Strand=Plus/Minus Query 9938 GACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAG 9997 ||||||||| ||| ||| ||||| || || ||||||||||| | |||||| | || Sbjct 1283 GACGCCCGCTTTCGCGTAGTCCGAAACGCGCTTTTCGAAGAAGTTTGTCTTGCCTTGCAG 1224 Query 9998 GGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAG 10057 ||| ||||||||||||||||| || |||||| | | | | | ||| ||| ||||| Sbjct 1223 GGAGATGAGCTCCATGAAGTCGAACGGGTTCGCCGTGTTGTAGTACTTCTCGTAGCCGAG 1164 Query 10058 TGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCAT 10117 | ||| | ||||| ||||||||||||||||| ||||||||| |||||| Sbjct 1163 AGTCACGAACAGTCGGTCGCACACGAACTCGATGTACTTCGCCATCAGGTCGCTGTTCAT 1104 Query 10118 GCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTC 10177 || |||| | || | ||||| | || ||||| ||| |||| || || || Sbjct 1103 CCCGATCAGCTTGACCGGCAGTGCGTCCGTTACAAACTCCTTCTCGATGGCTACAGCCTC 1044 Query 10178 CTCGACGATGCTCTTTACCACGTCAAG-GGACAGCT--------TGTTCTCGAGCTTCGA 10228 | | | || || |||| || | | ||| ||| ||||||||| Sbjct 1043 CGC----AAGCAATT--CCACCACACGCTCCCTGCTGAGGCGTGTGTACTCGAGCTTGTT 990 Query 10229 ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288 || || || | || | ||| | ||||||||| ||| |||| ||||||| | Sbjct 989 GTAGAGCAGGCAGGCGAAGTCGCAGTGCATGCCCTCGTCTCGGGAGATGTACTCGTTCGT 930 Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCC 10348 || ||| || ||||| |||||||| || ||||||||| || | |||||||||||| Sbjct 929 GAACGTCAGCCCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGATCGAGCAGAACGACCC 870 Query 10349 GGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGG 10406 ||||| |||||| |||||||| | | |||||||| | ||| ||||| | | | Sbjct 869 GGAGA--AGAAGATGCCCTCCACCGCTGCGAACGCGACGAGCCTCTCCGCGAACGTGGCG 812 Query 10407 TCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCG 10466 || | | || ||||||| | |||||||| ||| || | |||| | Sbjct 811 GAGCTGCCGATCCACTTGATGGCCCACTCGGCCTTCTTCGTGACGCACGGCACCGTCGAG 752 Query 10467 ATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGG 10526 || |||| ||| ||| ||| |||| | || || || | || | |||||| Sbjct 751 ATCGCCTTGAACAGCGTGTCTTTTTCGGCGTTGTTCTTGATGTACGTGTCGATGAGCAGA 692 Query 10527 GAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCC 10586 ||| |||| |||| | | || | |||| | ||||||| || ||| Sbjct 691 CTGTACGTCTCGGAATGGATGTTTTCGATCGCGATCTGGAACCCGTAGAAGCACCGGGCC 632 Query 10587 GAGGGG-TCCG--TGAC-TTCCT---CGGCAAAGTTGTTGTTCAGGTTCTCCATCACCAT 10639 |||| || | || | ||| | | || ||| |||||||| | || || Sbjct 631 TCGGGGATCTGGATGTCGTTCATGAACCGCGAAG-------CGAGGTTCTCGAGGACGAT 579 Query 10640 GCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTT 10699 ||| ||| | || ||||| |||||| ||| |||||||||| ||||| | ||||| Sbjct 578 GCCGTCGGAAGCGGCGAAGAACGCGAGGACGTGGGTGATGAAGTGTCGCTCCCCGTCGTT 519 Query 10700 CAGTTTTTCACGCCAGTCTACCACATCCTGGTTG--AGCTGGACCTCCTCCACGGTCCAG 10757 || || |||||| || || || | || | ||||| || || |||||| Sbjct 518 GAGGCCCTC---CCAGTCCTTCAGGTC--GGCCGCCAGGTCAACCTCTTCGACCGTCCAG 464 Query 10758 AAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC 10814 || | ||| | || |||||||||||| | ||||| |||| | ||||||||||| Sbjct 463 AATGAGGCCTCCGCGGCCTTGTACATCTGCCAGATGTCCGGGTGCTGGATGGGGAAC 407 >seq34640 Length=3269 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || || | |||| ||| ||||| ||||| || |||||||| || || | Sbjct 1115 TCCACCACGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 1174 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || ||||| || || || | ||||||||||||||| || | | || ||||| || || Sbjct 1175 AAGCGTCCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGG 1234 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||| |||||||| || ||||| | ||| || |||||||||||| || || || Sbjct 1235 GATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGAC 1294 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || ||||| |||||||| ||||| |||||||| Sbjct 1295 CTCGAGCGTGATTGTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCAT 1342 >seq29849 Length=3363 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || || ||||| ||||| ||||| || |||| || || | Sbjct 1055 AGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGA 1114 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || || || | ||||| || ||||| || | || || ||||| || || ||||||||| Sbjct 1115 CCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCC 1174 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| | ||| ||| ||| || ||||| || || ||||| | ||| Sbjct 1175 TTGTCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGACTCGACTTCGAGAGTG 1234 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || || || || || || ||||| || || || |||||| ||| Sbjct 1235 ATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCATTTTGC 1277 >seq705 Length=2192 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 225467 GACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCC-ATGCCAC 225525 ||||| || ||| ||| ||||| | ||||| ||||| || || | | || |||| || Sbjct 1378 GACACGATCATGCACGTCACGTCCTTCAGGTTCTTGATGTA-GTCCTCAACCCATGCAAC 1320 Query 225526 GTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAG 225585 ||| | ||||||| |||||| || || ||||||| ||||||||||| || | || Sbjct 1319 GTTCTTCACGTCCAAGTGGTTCGTCGGGTCGTCCATCAGCAGGATGTCCGCCTTCTGAAG 1260 Query 225586 GATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 || || |||| | | ||||||||| |||| || || ||||| || Sbjct 1259 CATCGCTCGCGCCAACGCAAGCTTCATTCTCCAACCTCCAGACAGCGA 1212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921168351204360