Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_009016.1 Length=38197 Score E Sequences producing significant alignments: (Bits) Value seq23245 246 7e-61 >seq23245 Length=20983 Score = 246 bits (272), Expect = 7e-61 Identities = 389/553 (70%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 14785 CGCCGTCCACCATCGCCATGGGCGCAGTGGCCGCGGTGAAGCCGTGGGAGTCTCCAGGCA 14844 ||||||| || | ||||| | ||| ||||| ||| |||| ||||| || |||| Sbjct 7638 CGCCGTCGTCCCTGGCCATCGCCGCGCTGGCCAAGGTCAAGCAATGGGAAAGCCCGGGCA 7579 Query 14845 ACCAAGGCGTGCTGATTC-AGGATGTGGCTCGAGTCATCGACTACAACATCCTGGACAAG 14903 | || || | || | | || ||| | || || | || ||||||||||| |||| Sbjct 7578 ATCA-GGTGACCTTCGCCGAAGACGTGTCCCGCGTGGTTGAGTACAACATCCTCGACACC 7520 Query 14904 AGCACCGAGGGTGACCTGCTCAACCGTAACGGCGTGAGCTACTTTGCTCGCACTAGCATG 14963 |||||| || |||||||||||||| ||||||||||||||| || ||||| | | | Sbjct 7519 TCCACCGAAGGCGACCTGCTCAACCGCTACGGCGTGAGCTACTACGCCCGCACCATCCTC 7460 Query 14964 GGCGGCTTTAGTCTTATCGGCAACCGCACGGTGACGGGCAAGTTTATCTCGTTTGTCGGC 15023 |||||||| || | || |||||| | | || |||||||| ||| | || ||| Sbjct 7459 GGCGGCTTCTCGCTGCTGGGTAACCGCTCCATCACCGGCAAGTTCATCAGCTACGTGGGC 7400 Query 15024 CTCGAGGACGCCATCGCTCGCAAGCTGG--AAGCAGCCAGCCAGCGTGCTATGTCCAAGC 15081 || || || || ||| |||||||||| ||| ||| ||||| || ||| ||||| Sbjct 7399 CTGGAAGATGCGATCAGCCGCAAGCTGGTCAAG--GCCGGCCAGAAAGCCATGGCCAAGA 7342 Query 15082 AGCTGACCAAGAGCTTCATGGAGCAGGAAATCAAGAAGATTAACCTGTTCATGCAAGACC 15141 | || |||||| |||||||| ||||| ||||| || ||| | ||||| || Sbjct 7341 ACCTCACCAAGTCGTTCATGGACCAGGAGGTCAAGCGCATCAACGACTGGCTGCAAACCC 7282 Query 15142 TTGTCGCGGCTGAAATTATCCCAGGCGGTGAAGTGTACCTGCACCCGACTCTTAACACGG 15201 | || || | || | || |||||||| |||||||||||||| || |||| | Sbjct 7281 TGGTGGCCGACGAGACCATTCCAGGCGGCAGCGTGTACCTGCACCCTGAACTGAACAGTG 7222 Query 15202 TCGAGCGGTATAAGAACGGCTCCTGGTACATCGTGATCGATTACGGCCGTTACAGCCCGA 15261 ||||| ||| ||||||||| |||||| |||||| ||||| |||||||| ||| |||| Sbjct 7221 TCGAGAAGTACAAGAACGGCACCTGGTTCATCGTCATCGACTACGGCCGCTACGCGCCGA 7162 Query 15262 ACGAGCACATGATTTTCCACCTGAATGCGGTAGACCGCATCGTCGAAGAGTTCATTGAGG 15321 |||| |||||||||| || || || || || ||| |||| ||||| | |||| Sbjct 7161 ACGAACACATGATTTATCAACTCAACGCCCGCGATGAAATCATCGAGCAGTTCCTGGAGG 7102 Query 15322 AGGTGCTGTAATG 15334 | || || ||||| Sbjct 7101 ACGTTCTCTAATG 7089 Score = 116 bits (128), Expect = 9e-22 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 20194 ACCCTCGGCGATCTGTTCCGCCAGGTGATAACGACCCACGGCTACTCGTCGCGGGTAGCG 20253 ||||| |||| ||||||||||| ||| ||| | || | ||| | |||| ||| Sbjct 2686 ACCCTGGGCGCACTGTTCCGCCAACTGACCACGCATTATGGATTCTCACCCAGGGTCGCG 2627 Query 20254 CCTGACCTGGACGCCATCATGCTCGAGCACGTTGACCAGTCCGACGAGACGGACATGAGT 20313 || || |||||||| | | ||| ||| | |||||| || |||| | |||||||| Sbjct 2626 CCGGATCTGGACGCTGAAAAGATCGCTCACATCGACCAGACCAACGAAAGCGACATGAGC 2567 Query 20314 TTTCTGACCAGGCTGGCCAAGCGTTACGACGCCGTCACCAAGCCAGTCGACCAGCTCTAT 20373 || |||||| |||| |||||||||| || || || ||||||| |||||| |||| ||| Sbjct 2566 TTCCTGACCCGGCTTGCCAAGCGTTTTGATGCGGTGGCCAAGCCTGTCGACGAGCTGTAT 2507 Query 20374 GTTCTGGCCCGT 20385 || |||| |||| Sbjct 2506 GTGCTGGGCCGT 2495 Score = 93.3 bits (102), Expect = 1e-14 Identities = 172/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 11300 TGAGTATGAGGTTCGGGAGATCGGCTTTTACCTCGAGTCCGGCACCTTGCTGGCCGTGTA 11359 |||||||||| || | ||| | || |||||||| | ||| ||||||||||| || || Sbjct 9784 TGAGTATGAGATTGGAGAGTTTGGGTTTTACCTGGCTAGCGGGACCTTGCTGGCAGTTTA 9725 Query 11360 CTCGGTACCGAACACCCTGCTCACGTATAAGTCGGCCAACAGCAGCTG-GATCCAGAAGT 11418 || || | | | ||||| || ||| ||||| | || || | | ||||||| Sbjct 9724 TTCTGTTGCCGGGAAATTACTCACCTACAAGGCGGCCG-CGGCCCGTGTGTTGCAGAAGT 9666 Query 11419 TCACTCTGGATATCTCGCCGCTGCCAACTGACAGCGTGACCGTCGTGGTCGGTACGGAAA 11478 | || ||||| || |||| ||||| || |||||||| || || || || | ||||| Sbjct 9665 TTACGCTGGACATGACGCCACTGCCGGTCGATAGCGTGACGGTAGTAGTGGGCATGGAAA 9606 Query 11479 ACATCAATCTGATGATGACCGAGGAACTGGCCACCATGGCCACGGCCCAGATTGACAACA 11538 | | ||| | | || | ||||||||||| | |||| || ||| | || ||||| | Sbjct 9605 ATCTTAATATTTTAATTGCAGAGGAACTGGCTGCAGTGGCGACAGCCAATATCGACAATA 9546 Query 11539 TGACCCGGCA 11548 || | || || Sbjct 9545 TGGCTCGCCA 9536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122051649494654