Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq26061 351 2e-91 >seq26061 Length=1673 Score = 351 bits (388), Expect = 2e-91 Identities = 604/869 (70%), Gaps = 25/869 (3%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| |||||| |||||||||| ||||||||| ||| || ||| |||||| | | Sbjct 414 ATCCAGCACCCGGACATCTGGCAGATGTACAAGGCCGCGGAGGCCTCATTCTGGACGGTC 473 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAG----TCACTGTCTGAGAACGA 42400 || ||| |||||||||| ||| | | ||||||| ||| | | | || ||| Sbjct 474 GAAGAGGTTGACCTGGCGGCCGACCTGAAGGACTGGGAGGGCCTCAACGACGGGGAGCGA 533 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 | ||| ||| || | || || ||||||||||| || |||||||| ||| || Sbjct 534 CAC----TTCATCACCCACGTCCTCGCGTTCTTCGCCGCTTCCGACGGCATCGTCCTCGA 589 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGG 42520 |||||| || | |||||||||| || | ||| | ||||| || ||||||||||| Sbjct 590 GAACCTCGCTTCGCGGTTCATGAACGACATCCAGATCCCCGAGGCCCGGTGCTTCTACGG 649 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACAC 42577 |||||||| || || || ||| | || || ||| |||| | ||||||| |||| Sbjct 650 GTTCCAGATCGCGATCGAAAACATCCATTCCGAGACGTAC---AGTCTGCTCATCGACAC 706 Query 42578 GTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTG 42637 ||||||| | | || ||| || |||||||||||| || |||| |||| || Sbjct 707 GTACATCAAGAACAACGCCGAAAAAGACACGCTGTTCAAGGCGATCTCGACGGTGCCGTG 766 Query 42638 CATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGG 42697 | ||| ||||||||| || ||||| |||| ||||||| || ||| | ||||||| Sbjct 767 CGTCACGAAGAAGGCCGAGTGGGCCATCAAGTGGATCGGCAGCTCCGCC---ACGTTCGC 823 Query 42698 CGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTC 42757 |||||||| || || || | || || ||||||||||||||||| || | ||| ||| Sbjct 824 GGAGAGGCTCGTCGCGTTCGCAGCGGTGGAGGGCATCTTCTTCTCCGGGTCGTTCTGCTC 883 Query 42758 CATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||| ||| || || | |||||| || || || ||| ||||||| ||| Sbjct 884 GATCTTCTGGCTGAAGAAGCGGGGGCTGATGCCGGGGCTGACGTTCACGAACGAGTACAT 943 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG 42877 | | | |||||||| |||| | ||||| |||||||| || | | | | | ||| Sbjct 944 CTCCCGAGACGAGGGCATGCACTGCGACTTCGCCTGCCTGCTCTAC---AACAAGCTCGA 1000 Query 42878 GCACAAGC-CCTCG--AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA 42934 | ||| | |||| | |||||| || || | | ||||||| || | ||||| Sbjct 1001 GTACACACGCCTCAGCAGGGAGCGTGTGGTGGAATTGCTTGCGGAGGCTGTAGCCATCGA 1060 Query 42935 GAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCAT 42994 ||||||||| | ||| | | ||||| || ||| |||| |||||| |||||| || Sbjct 1061 GAAGGAGTTTGTAACGGACGCACTGCCGGTCAAGCTGATCGGGATGAACAGCGACCTGAT 1120 Query 42995 GTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCC 43053 | ||||||||| ||| ||| ||||| || | ||| | || | || | Sbjct 1121 GGCGAAGTACATCGAGTTCGTGTGCGACCGACTGTTCGTGACTCTCGGCTACGAGAAG-T 1179 Query 43054 TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113 |||||||||| || ||| |||||||| |||||| |||||| || | |||||||| | Sbjct 1180 ACTACAACACGGCGAACCCGTTCGACTTCATGGAGCTCATCTCCCTGCAAGGCAAGACAA 1239 Query 43114 ACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 |||| ||||| |||||||| | |||||| Sbjct 1240 ACTTCTTCGAAAAGCGCGTTTCGGACTAC 1268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943873959488880