Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq8566 96.9 1e-15 >seq8566 Length=6269 Score = 96.9 bits (106), Expect = 1e-15 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 18055 CTTCGATGGTCGATAAGTGGGCGCTGTA-CGCAATCGCGCGTTACTGCGACGAACTCGTG 18113 ||| ||||||||| ||||||| ||| || |||| || ||| ||||||||| | | ||| Sbjct 3509 CTTGGATGGTCGACAAGTGGGAGCTTTATCGCA-TCTCGCAGTACTGCGACCAGTTGGTG 3451 Query 18114 TCCGACGGGAAGGGCGGCAAGGAGCCGCGCTTCACCTGCAAC 18155 | ||||| ||||||||| ||||||||||||||| ||||||| Sbjct 3450 CCGGACGGTAAGGGCGGCCAGGAGCCGCGCTTCATCTGCAAC 3409 Score = 84.2 bits (92), Expect = 7e-12 Identities = 159/225 (71%), Gaps = 12/225 (5%) Strand=Plus/Minus Query 19348 TGTACGGGATCGATCTGAAATGGGCGTTTCCGGGTGACGGATCCGCTGGCGACACGCAGC 19407 ||| ||| |||| |||| |||| |||||| || || ||| | || || |||| Sbjct 2222 TGTTCGGCATCGGCTTGAAGTGGG-GTTTCCC--TGCTGG---CGCCGAGGATACCCAGC 2169 Query 19408 GAACGGAGATCTGGTACAGCCGCACGCCGAATCGCGACGACGCGACCAAGTTCTCCGACT 19467 | || ||| ||||||||| || ||| || | || || |||||| ||| | | || | Sbjct 2168 GCACCGAGCTCTGGTACAACCCGACGAACAACCTCGGCGCCGCGACGAAGCTGGCGGATT 2109 Query 19468 TCGCGTATCCGCAGGCGTCGACG-TCGTAT-CAGGGGCTCGCGGTCGGGCAGGT-GTTTT 19524 | || || |||||||| |||| ||| || ||| ||| || | ||||| | ||| | Sbjct 2108 TGGCATACCCGCAGGC--CGACTATCGCATGCAGTCGCT-GCTGGCGGGCGCGCAGTTCT 2052 Query 19525 ATTTCTGGGCGCGCCTGGTCGACACGTCCGGCAACGTCGGGCCGT 19569 ||||||||||||||||| ||| |||||||| ||||||||| Sbjct 2051 TCTTCTGGGCGCGCCTGGTGGACCGCACCGGCAACATCGGGCCGT 2007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155562358154616