Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq8416 179 9e-41 >seq8416 Length=35894 Score = 179 bits (198), Expect = 9e-41 Identities = 381/556 (69%), Gaps = 12/556 (2%) Strand=Plus/Minus Query 25937 CGTATTGATCGGTGTCGCCGACGCGCTCGTAGACGCGGACATACGACTTGCTGCCGATCA 25996 ||||||| ||||| || || || |||| || ||||||| || |||||| |||||||| Sbjct 6562 CGTATTGGTCGGTATCACCAACCCGCTGATACACGCGGATGTAGGACTTGGAGCCGATCA 6503 Query 25997 CCTGGAGCGCCTCGCCGATCGCTCGCATCGCTTCCAGCCAGCGCGGATCGGTGATGTCCA 26056 ||||| || ||||| || || |||| || | ||||||| ||||||||| |||| Sbjct 6502 CCTGGCAGGCGTCGCCAATGGCCTGCATGGCGCGCTGCCAGCGTTCATCGGTGATTTCCA 6443 Query 26057 GTCGGCGCAGCGCGAGCACGCGCCCGGTGTTGATCTGGCCTTCCTTGTCGGTCGCAAACG 26116 ||||||| ||| || ||||| | ||| ||| | ||| | | ||| ||| ||| | Sbjct 6442 TACGGCGCAACGCCAGGACGCGGGCTGTGCGGATGTCGCCCTTTTGGTCAGTCCGAAAGG 6383 Query 26117 CCTGCGTCACGATCGCCTGA--ATCTCAGGGCGGGCGTCCGTGGTCCAGTCACGCAGACA 26174 | | | || | || ||| | || || || || | | ||||||||| ||||| || Sbjct 6382 CATCATTTACCA--GCGTGACCACTTCGGGACGTGCCCCGGCGGTCCAGTCGCGCAGGCA 6325 Query 26175 CTCGTCGATCATGGATTTGGCGGCCTGCAGGCGCTCGTCGAACGCAATGCGGTCCTGGAT 26234 ||| || |||| | || ||||| ||||| |||||||| || |||| ||||||| Sbjct 6324 CTCATCAATCAATGCACGCGCAGCCTGGAGGCGTTCGTCGAAAGCGATGCTTTCCTGGAC 6265 Query 26235 GGCCCGCTGGAT-TCGATAGCGACCGTCGAACGAGTACAGTGTGACGTTGCCCTTCTTAC 26293 || ||| ||| | || | || || ||||| | ||| |||| || |||||||| | Sbjct 6264 TGCGCGCATGATCTTGA-AACGCCCATCGAAGCTGATCAGGCTGACATTTCCCTTCTTGC 6206 Query 26294 CGCCGACCTTCGAGCCGTATTCTTCGGCGGAGAGGTCGATGAAGGCCGAGATATCGCCGA 26353 | |||| || | |||||| | || || ||| |||| ||||| |||||| |||| Sbjct 6205 CACCGATCTGGGCGCCGTACTGCTCAGCACTGAGTTCGACAAAGGCTTCGATATCACCGA 6146 Query 26354 AGATTCGA-GCCTTCAGGTCGACGAGCCCCTTCGATCTC-GTTTTGGCTTCGTCCGCCAG 26411 || ||| ||||| | | | || | | ||| | | | ||||| || |||| Sbjct 6145 AG-GCCGAGGCCTTGAACTTCGCCAG-CACATCGCTGGCAGCGCGGGCTTTTTCAACCAG 6088 Query 26412 CTCGCGAACGAGTCGATCGCGCTCGCGGTCGATCGGTTTGATCATGCTTTCCGGGATCAG 26471 | | || || || ||||| |||| || |||||||||| ||||||||||||| Sbjct 6087 GCCAAGTACCAGGGCGTCCCGCTCCAGGTCTATAGGTTTGATCAGACTTTCCGGGATCA- 6029 Query 26472 GCAGCCTTT-CGCGTC 26486 || || ||| |||||| Sbjct 6028 GCCGCTTTTGCGCGTC 6013 Score = 143 bits (158), Expect = 6e-30 Identities = 670/1045 (64%), Gaps = 29/1045 (3%) Strand=Plus/Plus Query 906 TGCGCTGTCGTCGCGCCCGTCGAACCTGCGCGGCAAGCAAGGTCGCGTGATCATCGACGA 965 ||||||| | |||||||| |||||||||||| || || || | |||||||| Sbjct 14132 TGCGCTGACCAGTCGCCCGTCCAACCTGCGCGGCCGTCAGGGCGTTGTCGTGATCGACGA 14191 Query 966 AGCTGCGTTCCACGAGCAGCTCGGCGAGCTGCTGAAAGCTGCAATGGCCCTGCTGATGTG 1025 ||| |||||||| | | | | | |||||||||||||||||| ||||| ||| |||| || Sbjct 14192 AGCCGCGTTCCATGCGGACTTGGCCGAGCTGCTGAAAGCTGCCATGGCTCTGTTGATCTG 14251 Query 1026 GGGCGGTCAGGTCCACATCATTTCGACGCACGACGGCGTCGACAACGCGTTCAACGAGCT 1085 ||||||| | ||||| | || || |||||||| || ||| | |||||||| || Sbjct 14252 GGGCGGTGAAGTCCATGTGATCAGCACCCACGACGGTACGGAGAACCCCTTCAACGACCT 14311 Query 1086 GGTCACGGACGTCCGTTCCGGCAAGAAGCCCTACAG-CCTGCATCGCATCACGTTCGCCG 1144 ||||| || |||| | |||||| || | | || ||| |||||||| | Sbjct 14312 GGTCAACGAAATCCGGGCAGGCAAG-CGCAATGGTGAAGTGTTCCGCTGCACGTTCGGTG 14370 Query 1145 ACGCGGTTCAGGACGGGCTCTACCAGCGAATTTGCTTGCGCAAGGGCGAAGCCTGGACGG 1204 | || ||| || || || ||| |||| | ||| |||| || ||| | | | || Sbjct 14371 AAGCCGTTGCTGATGGTCTGTACAAGCGTGTCTGCCTGCGTAAAGGCATTGAGTACA-GG 14429 Query 1205 CCGAAGG--CGAA--GCCAAGTGGGTCAAGGAC--ATTCGCGCGTCGTACGGCGCCGATG 1258 | ||| | || ||| ||||| || ||| || || || || ||||||| | | Sbjct 14430 CTTGAGGATCAAATCGCC---TGGGTGAATGACGTATACG-GCTTC-TACGGCGATGCAG 14484 Query 1259 CCGAGGAAGAGCTGGATTGCGTGCCGAAGAACAGCGGCGGCGCATGGCTCTCGCGCGCGC 1318 |||| ||||| | || |||||||| | | ||||| || | ||| || | Sbjct 14485 CCGACGAAGAATTAGACTGCGTGCCATCCCAGGGTGGCGGTGCCTTCCTCAGCATGGCCC 14544 Query 1319 TGATCGAGTCGCGCATGTCGGC-CGATACGCCGGTGTTGCGCTGGGCCTGCAAACAGGGT 1377 || | ||| ||||| || | || |||||| ||||| ||| | | |||||| Sbjct 14545 TGGTTGAGCAGCGCA-GTAATCGTGACGTGCCGGTACTGCGCCTGGCATACCCGCAGGGT 14603 Query 1378 TTTGAGGTGCTTCCGGATCACATCCGCGCAGCCGAATGCAGGGATTGGCTCGACGCGACG 1437 | || | | || ||| | ||| ||||| | | ||| ||| ||| | | Sbjct 14604 TACGAAACCATCGCCGAACACTTGCGCCTGGCCGAGTCCCTGGAGTGGTGCGAAGAGCAT 14663 Query 1438 CTCGGCCCGCTGCTCGCGGCGCTTCCGGCCGACGCTCGCTCGTACAACGGCGAGGACTTC 1497 | ||| ||||| |||| |||| |||| || | | | ||| ||||||| Sbjct 14664 TTGCTCCCTCTGCTTTCGGCCATTCCCCTGGACGTTCAGAGCTTCTATGGCATGGACTTC 14723 Query 1498 GGCCGCACGGGCGACCTGACGGTCCACGTGCCGCTGATCGAACAACAGAACCTGATCCGC 1557 || ||| | |||||||| ||||| | ||| || || || | ||||| ||| | Sbjct 14724 GGGCGCTCCGGCGACCTCTCGGTCTTCTGGCCATTGCTCAAAGAGCAGAATCTGCGCAAA 14783 Query 1558 CGTGTGCCGTTCATCGTCGAGCTGCGCAACGTGCCTTTCCGGCAGCAGGAACAAATCGCT 1617 || ||| || | ||||||||||| ||||| || ||| ||| || || || Sbjct 14784 CGCACGCCCTTTGTGGTCGAGCTGCGTAACGTCCCGTTCAAGCAACAACTCCAGATTAAG 14843 Query 1618 TTCTACCTGCTCGACCGGCTCCCGCGCTTCACGGGCGGTGCCTTCGATGCGCGCGGCAAC 1677 || ||| | || || | || ||| || ||| ||| || | |||||| Sbjct 14844 TTTTACATCATCCGTCGCTTACCCAATTTCCTCAAAGGCGCCGACGACGCCAGGGGCAAC 14903 Query 1678 GGCCAGTACCTCGCCGAGATCGCCATGCAG-CG-CTACGGCGCGTCGCGCATCCAGCAAG 1735 ||| | | || | || || | ||| | || | |||| |||||| ||| | Sbjct 14904 GGCTCGCAACT-GTCG-GAAGACACTGCCGTCGAGTTCGGCTTCAACCGCATCGAGCGTG 14961 Query 1736 TGATGCTGTCGGAGTCGTGGTATCGCGAGCACATGCCGCCCGTGAAGGCAGCATTCGAAG 1795 ||||||| | ||| ||||||||||| ||||||| || | ||||| || | |||| Sbjct 14962 TGATGCTCACCGAGGGCTGGTATCGCGACAACATGCCACCGTTCAAGGCCGCCCTGGAAG 15021 Query 1796 ACGGCACGATCGACGGCCTTCCGAAGGATGCAGACGTGCTCGCCGACCTGCGCGCCGTCC 1855 | | ||| || ||| | | ||| || ||||||| || |||| |||| ||| | | Sbjct 15022 ATGACACCTTCTACGACATCCCGGCCGACAAAGACGTGGTCAGCGACGTGCGTGCCTTTC 15081 Query 1856 AGGTCATCAAGGGCGTGCCGCGCATCCCGGACGTGCGCAC------GACCGGCCAGGACG 1909 | | ||||||| ||| | ||||||||||| ||||| || ||| | | | Sbjct 15082 GGATGGTCAAGGGTGTGGCCCGCATCCCGGAGAAACGCACCAACGAGAAAGGCGAAAAAG 15141 Query 1910 ACGG---CAAGCGCCACGGCGACGC 1931 ||| |||||||||||||||||| Sbjct 15142 CCGGCCCCAAGCGCCACGGCGACGC 15166 Score = 98.7 bits (108), Expect = 2e-16 Identities = 310/474 (65%), Gaps = 6/474 (1%) Strand=Plus/Plus Query 35659 TACCGCGCCGAGCTGACGCGCAACGCGCGCGCCGTCTGGGGTATCGATGCGCCTGTCTCG 35718 |||||| ||| ||||| |||| ||| | | | ||||| | ||||| || || || Sbjct 11252 TACCGCCGCGACCTGACCCGCATCGCCCAGTCGGAATGGGGCCTGGATGCACCGGTATCC 11311 Query 35719 TCGTTCGCGGCGCAAATCCACCAGGAAAGCCGCTGGCGCGCGGACGC--AGTCAGCGTCG 35776 | ||||| || || ||||||||||||||||||||| ||||| |||| || || Sbjct 11312 ACCTTCGCCGCTCAGATCCACCAGGAAAGCCGCTGGAAGTTCGACGCGAAGTC-GC-CCG 11369 Query 35777 TCGGCGCGCGTGGCATGTCGCAGTTCATGCCATCGACGGTCGACTGGATCGCGGGCGCCT 35836 |||| |||| ||| || ||| | ||||| ||||| | | |||| | || | | Sbjct 11370 TCGGTGCGCAAGGCTTGGGCCAGGTGATGCCCTCGACCGCCACCTGGCTTGCCGAGTTGT 11429 Query 35837 ATCCGTCCGAGCTGGGCGAGGCGCAGCCGTTCAATCCGTCCTGGTCGATTCGTGCGCTCG 35896 ||| | || ||| ||| |||||| || ||| ||||| || | || || | Sbjct 11430 TTCCCAAGGCTCTCGGCAAGGTCGAGCCGTATAACCCGGTTTGGTCCATGCAGGCACTTG 11489 Query 35897 TGCGCTACGACCGGCACCTCTGGGAGCGCATCACGGCGGCCGGTGCATGTGAGCGCATGG 35956 | |||| ||||| || | | ||||||| |||| || | || || | || Sbjct 11490 TCAGCTATGACCGCTGGCTAGCGAACCGCATCAAGGCGCGTGGCCCCTGCGAACAAGGGG 11549 Query 35957 CGATGGCCCTGTCGGCTTACAACGGCGGCTTGGGCTGGGTCTATCGCGATCAGCGCG-TG 36015 || || ||| || || ||||||||||| ||||||||||| ||| | || | || Sbjct 11550 CGCTGATCCTTTCCGCCTACAACGGCGGTTTGGGCTGGGT-GATCAAAGACCGCAAGTTG 11608 Query 36016 GCGGCCGCGGGCGGCGCCGATCGGCAGCGTTGGTTCGGCCATGTCGAGCGCTTCAACGCC 36075 || | || || ||||||| || | |||||| | |||||||| ||||| | Sbjct 11609 GCATCGGCTAAGGGTGCCGATCCGCTGACCTGGTTCAACTCCGTCGAGCGGTTCAATAAC 11668 Query 36076 GGCCGACACGCGGCCGCATTCCGCGAGAACCGCGGCTACCCGCGCGTGATCCTG 36129 ||||| || || || ||| || || || |||||||| |||||||| Sbjct 11669 GGCCGCTCGGCTGCTGCGTTCAAGGAAAATCGTCAATACCCGCGTCTGATCCTG 11722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119649574262848