Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_009818.1 Length=36409 Score E Sequences producing significant alignments: (Bits) Value seq8416 273 5e-69 >seq8416 Length=35894 Score = 273 bits (302), Expect = 5e-69 Identities = 274/356 (77%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 1435 AAAGACGACCGCACCCTGGACATCTTCGATGTTCCGCAGCCAGCCCGCGCTATACCCGGC 1494 ||||| ||| | || | ||||||||| |||||||||||| | | |||||||||| Sbjct 1466 AAAGATGACAGAACATTAGACATCTTCTCTGTTCCGCAGCCGGTGCTTTCTATACCCGGT 1525 Query 1495 GAGTGCAACTATGCCGCCCAGGTCAGCGAGCTGGTCAGCGAAATTCTGAAGGCCGCCAAC 1554 | |||||||||||||||||||||||||||||||||||||| | || || | || || Sbjct 1526 CACGGCAACTATGCCGCCCAGGTCAGCGAGCTGGTCAGCGAAGTCCTCAAAGAGTCCGAC 1585 Query 1555 CTCGACCGTTACGAGATTGCCGCCCGCATGTCGCGCCTCTCCGGCGATGACGTGAGCAAG 1614 | ||||| || |||||||| || |||||||| ||||| || ||||| ||||| |||||| Sbjct 1586 TTGGACCGCTATGAGATTGCGGCTCGCATGTCACGCCTTTCGGGCGACGACGTTAGCAAG 1645 Query 1615 AACATGCTCGACGCCTGGTCGAGTCCCGCCCGAGTTGATCACAACTTGCCTTTCTACCGC 1674 |||||| | ||||||||||| ||||| ||||| | ||||||||| | ||| | || || Sbjct 1646 AACATGTTAGACGCCTGGTCAAGTCCTGCCCGTGCAGATCACAACCTACCTCTGTATCGA 1705 Query 1675 GCCGCCCTCCTGGAGGACGTCTGTGCGAGCCACCTGCTGACCAACTGGCTGGTCGATGTG 1734 || || | |||||||| |||||||| ||||| | ||||| || |||| || | || Sbjct 1706 GCTGCTTTGCTGGAGGAAGTCTGTGCAAGCCATGTCCTGACGAATTGGCAAGTACACCTG 1765 Query 1735 CGTGGCGGCCGCGTGGCCTATGGCCGAGACGCACTGCTCGCCGAACTGGGCCGCCT 1790 || || ||||| || || ||||| || || || ||| ||| ||| | || ||||| Sbjct 1766 CGCGGTGGCCGGGTCGCTTATGGGCGCGAGGCTCTGGACGCGGAAATAGGTCGCCT 1821 Score = 147 bits (162), Expect = 5e-31 Identities = 137/172 (80%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 8291 CGGCCAAGAACCGCA--CCGTCCACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCT 8348 |||||| |||| | || | |||| ||||||||||||||||| || | |||||||||| Sbjct 8662 CGGCCAGGAACAACTTGCCCTGCACTAAGCGAAACCGCCCCGGCGTG-CTGGGACGGTCT 8720 Query 8349 GCCGGACGTGGTGGTCCGGTACTGATGAGCAGCCACCCATGACGAACGAAACTAAGACGG 8408 |||||||||||| |||||||||||||||||||||||||||||| ||||||| | Sbjct 8721 GCCGGACGTGGTTGTCCGGTACTGATGAGCAGCCACCCATGACAGACGAAACACCCAAAC 8780 Query 8409 ACCGCCAGCGCCGCCTGGCGCGAGAACGCCAACGGGCGAAGCGCGAGCGCGA 8460 | ||||| ||||||||| || ||||| |||| || |||| ||||||| Sbjct 8781 AGCGCCAAACCCGCCTGGCACGCGAACGTAAACGTGCCCAGCGTAAGCGCGA 8832 Score = 116 bits (128), Expect = 9e-22 Identities = 317/475 (67%), Gaps = 33/475 (7%) Strand=Plus/Plus Query 2772 GCATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGCGACTTCACCAAGC---TGCTCCC 2828 ||| ||| |||| || |||| || |||| |||||| | ||||||| || ||| Sbjct 2615 GCAGGAACTCAAAGCCCTGCAACCATTCAAGCGCCGC---TCCACCAAGAGCATGTACCC 2671 Query 2829 GACCGACGTCTATTCATG--CGACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATG 2886 | |||||| ||||| ||||||||||| ||| || || ||||| | |||| | | Sbjct 2672 GTGCGACGT--ATTCACCGCCGACGGCCACAAGTTTGATGCAGAGGTATTGAACCC-ACG 2728 Query 2887 CAC-GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAAT 2945 ||| ||| ||| | ||| |||||| |||||| || |||| || ||| || || Sbjct 2729 CACCGGCAAGCCTTACCGCCCGGAAGCAACCACCGTCCTCGATGTCGCTACTCGC--AAG 2786 Query 2946 TCCG--GGATGGTCCACCGGCTTGGCTGAGTCGGCCCTGGTGGTGGTCGATGCCCTGCGC 3003 ||| || |||| || ||| ||||| || | | || | || |||||||| Sbjct 2787 GCCGTGGGTATTTCCATTGGTGAGGCCGAGTCCACCATCGGCGTTATGGACGCCCTGCGT 2846 Query 3004 GACGCC-TGCACCAAGGGCGGCATTCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTA 3062 |||||| |||| || |||||| || | |||||||| |||||||| || |||| Sbjct 2847 GACGCCATGCAGCA----CGGCATGTTTGCGGTGTTCTACGTTGACAACGGTTCCGGCTT 2902 Query 3063 CATCAACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGACAT 3122 |||| ||| | || || | | ||| || | | ||| |||| || Sbjct 2903 TGCCAACGACACCGTACGTGAAGTAG---TCGACCGTCTCGGC------GGCACT---AT 2950 Query 3123 GAAAAACAGCCTGCCCTACAACAGCCAGGCGCGGGGCGTGATTGAGCGCGTCCACCAGAG 3182 || | | ||||||||||||||||||| || ||| | |||||||| |||||| | Sbjct 2951 GACCCATGCCTTGCCCTACAACAGCCAGGCCCGCGGCCTCATTGAGCGTTCCCACCAAAC 3010 Query 3183 CCTGTGGATTCGGGCCGCCAAGGAACTGCCCGGATACATCGGCGCCGACATGGAC 3237 | ||| | || |||||| | ||| || | ||||||||||||||||||||| Sbjct 3011 GATTTGGGTCAATGCAGCCAAGAAGCTGACCAGCTACATCGGCGCCGACATGGAC 3065 Score = 100 bits (110), Expect = 7e-17 Identities = 219/322 (68%), Gaps = 11/322 (3%) Strand=Plus/Plus Query 8707 AAAATCCACATCGCCAAGACCCAGCTCGGCATGGACGATGACACCTATCGCGCATTGCTC 8766 || |||||||||||||||| | || || |||| ||||| ||||| ||||| ||| | Sbjct 9061 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGATGAAACCTACCGCGCCTTGTTG 9120 Query 8767 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGGTCGATCAGGTG 8826 | ||||| || | ||||| |||||||| || | ||| |||||| ||| ||| Sbjct 9121 GGCCGCGTGGCAGATGTGCGTTCGGCCAAAGATCTGACGCCACGCCAGATCGGCGCGGTA 9180 Query 8827 CTGGTCGAACTCCAGCGCTTGGGCTGGAAAC---CGAAGAGCAATCGGCAAGGCCGGGCG 8883 |||| ||| || ||| |||||||| | | | ||| || |||||| | || Sbjct 9181 CTGGCCGAGTTCGCTCGCCTGGGCTGGGAGCCTACAAAGGCTAAAAAGCAAGG--GCGCA 9238 Query 8884 ACGCCAAAAGTGCCG---CAAAACCG-GCAAACCGTGCTGCGCAAAATCACCGCGCTCCT 8939 | | || |||| || | | |||| | ||| | || || | ||||| || | || Sbjct 9239 AAG-CACCAGTGGCGGCTCCAGACCGTGTAAAAC-TGGTGGGGAAAATAGAGGCCTTTCT 9296 Query 8940 GGCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGT 8999 || || | || ||||| ||| |||||| ||||||| |||||||||| |||| Sbjct 9297 CTCCGAGGCAAAGCGTTCCTGGGCCTATGCCGACGGTATGGCCCTGCGCATGTTCAAGGT 9356 Query 9000 CGAGCGGGTCGAGTGGCTGGAC 9021 ||| || ||||| ||||| ||| Sbjct 9357 CGAACGCGTCGAATGGCTAGAC 9378 Score = 87.8 bits (96), Expect = 4e-13 Identities = 229/348 (66%), Gaps = 6/348 (2%) Strand=Plus/Plus Query 245 CATGTCCTTATACGCCTTGTTTTCGCTGATGATCGCGATAGAGCCATCG---AACTGCCG 301 |||| || ||| ||| |||| ||||||| | || | |||| || | ||| || Sbjct 323 CATGGTCTGATAAGCCGCGTTTGCGCTGATAACTGCTAC---GCCACCGCCAATCTGGCG 379 Query 302 TTGTAAGCGCTTGGCGTAGAGCTGATCCCCGACCCGAATCACATAGATCGCTTCATCCCG 361 ||| | ||||||||||| || || || | | ||||| || ||||| ||||| | Sbjct 380 TTGCAGCCGCTTGGCGTACAGATGGTCATCCAAGCGAATAACGTAGATGGCTTCCCCTTC 439 Query 362 CACGGTTCTAAGGTCATGGTCGATAACAACGGCGTCGCCATCCGACAGGAGGGGTTCCAT 421 || | | | | |||||||| | || | ||||||||| ||| | ||||| Sbjct 440 CAGGCTGTTGCGACTGTGGTCGATCAACACAGTGTCGCCATCACTCAGCACCCCCTCCAT 499 Query 422 GGAGTCGCCCCCGACCCTTACTGCCGACATCCTGGTTGGCTCTAACCCCTTCTTGCTCAA 481 ||||| || | |||| | ||||| | | | | ||||| || |||| ||||| ||| Sbjct 500 AGAGTCACCGTCCACCCGGATAGCCGAGAGCTTCGACGGCTCCAATCCCTGCTTGCGCAA 559 Query 482 GCTGTAGCGCGTAAAGGCAAGCTGCGTAAGAACGTGTGCGCCTTCGCTCCAGCTTCCATG 541 ||| ||||| || || ||||||||||| | || || || |||| || || Sbjct 560 TGAGTAAGTGGTAAAAGCCAGGTGCGTAAGAACCCGAGCCCCCTCTGTCCATGCCCCGTG 619 Query 542 TCCCGCGCTGACCCTCGCGTCATACAGGGGGACGTAGACGTATTGGTC 589 || || ||| | ||||| || |||||||| ||| ||||| ||| Sbjct 620 ACCGGCACTGCAACGAGCGTCGTAAAGGGGGACATAGCTGTATTTGTC 667 Score = 86.0 bits (94), Expect = 1e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 5691 TTCGTCCAGTTGCTGGCCGCCGAGGTGGCCCGCAGCAGCCAGACGAAGGCCGGCGAGGCA 5750 ||||| | ||||| |||||||| || ||| ||||| | || |||||| | || Sbjct 5320 TTCGTGCGCTTGCTTGCCGCCGAAGTTGCCGCCAGCAATAAAACCAAGGCCAGTCAGCGC 5379 Query 5751 ATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTCGCCAACCGCTACCCGTCGCCCTCG 5810 |||||||||||||| | |||||||| ||||| |||||||||||| |||||| Sbjct 5380 ATCGGCATGAGCCGCACAGCCGTCAGCTTGATCCTGGCCAACCGCTACAGCTCGCCCAGC 5439 Query 5811 ACGATCCGCGTCGAGCGCCGCGTCCTGGCCGCGCTGAGCCGTATTGAGTGCCCGGCCTTG 5870 || |||||||||| || || ||| | ||| | || ||||| ||| || || Sbjct 5440 ACCTCTGGCGTCGAGCGTCGGGTAATGGAAACCCTGGGGCGAATTGAATGCATCGCACTG 5499 Query 5871 GGCGAGGCGGTGACCTCGGTCGAGTGC 5897 | |||| | | ||| | | | ||||| Sbjct 5500 GACGAGACCATCACCACCGACCAGTGC 5526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116332727371526