Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq29849 159 8e-34 seq21875 143 6e-29 seq34640 127 5e-24 seq36249 87.8 4e-12 >seq29849 Length=3363 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| || || || || | || || ||||| || || |||||||| Sbjct 1046 CCACCTCTGAGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCA 1105 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||| |||||||||||||||| ||||| || | ||| Sbjct 1106 AGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGGCGGG 1165 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| |||| |||||||| || || | ||| | || || ||| Sbjct 1166 ATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGACTCGACT 1225 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||||||||| |||||||| ||||| || || || |||||| || Sbjct 1226 TCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCATTTTG 1276 >seq21875 Length=4161 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| | || || || | ||| || || ||||| || |||||||| Sbjct 217 CCACCACGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 276 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| | ||||| || | || ||||| ||||||||||| | ||| || ||| Sbjct 277 AGCGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGG 336 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || | ||||| || || || | ||| | || || || Sbjct 337 ATCCCTTCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACC 396 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||||||||||||||| ||||| ||||| |||||||| Sbjct 397 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 443 >seq34640 Length=3269 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || || || | ||| || || ||||| || ||||| || Sbjct 1115 TCCACCACGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 1174 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||||| | ||||| || | || || || |||||||||| ||||| || | || Sbjct 1175 AAGCGTCCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGG 1234 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || |||||||| |||| ||||| || || || | || |||| || || Sbjct 1235 GATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGAC 1294 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 1295 CTCGAGCGTGATTGTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCAT 1342 >seq36249 Length=3418 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || |||||||| || | |||||||| || || | || | || || Sbjct 3415 GGGATACCTTCCTTGTCCTGGATCTTTGACTTCACGTTCTCAATCGTGTCATTGGACTCG 3356 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTT 288479 || ||||| ||||||||||| || ||||| || ||||| || |||||||| |||| Sbjct 3355 ACCTCGAGTGTGATCGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATCGTGTT 3300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179058699227014