Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq29849 123 3e-23 seq34640 116 4e-21 seq2393 105 7e-18 seq21875 104 3e-17 >seq29849 Length=3363 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | |||| ||| | || | || |||||||||||| ||||| || || Sbjct 1045 ACCACCTCTGAGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGC 1104 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || || ||||| || ||||| || | |||||||||||| | || Sbjct 1105 AAGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGGCGG 1164 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||||||| ||| || || | || | | ||||||| | || || || Sbjct 1165 GATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGACTCGAC 1224 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| ||||| || ||||| || || ||||| ||||| ||||||||||| Sbjct 1225 TTCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCATTTT 1275 >seq34640 Length=3269 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| |||| || |||||| || || ||||| || || || |||| | Sbjct 1127 ACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCC 1186 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || | ||||||||||| | || | || |||||| Sbjct 1187 GTCCTCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTT 1246 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || || | || | | ||||| |||| || || |||| |||||| Sbjct 1247 GTCCTGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGAT 1306 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || |||||||| || ||||| || ||||| ||||| || Sbjct 1307 TGTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCATCTT 1345 >seq2393 Length=4323 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||||||||||| | || |||| |||||| || || || Sbjct 932 CTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAA 991 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 |||||||| |||||||| | || | | |||||||||| ||| | || | || | Sbjct 992 GATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTCC-TGAATCTTCGACTTCACAT 1050 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || |||| ||||| || | ||||| || ||||| || || || || | Sbjct 1051 TTTCGATGGTATCATTCGACTCCACCTCAAGGGTGATAGTCTTGCCAGTAAGAGTTTTCA 1110 Query 42196 CAAAGATTTGCATTTTC 42212 ||||||| |||||| || Sbjct 1111 CAAAGATCTGCATTCTC 1127 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||||||||||| | || |||| |||||| || || || Sbjct 1964 CTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAA 2023 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 |||||||| |||||||| | || | | |||||||||| ||| | || | || | Sbjct 2024 GATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTCC-TGAATCTTCGACTTCACAT 2082 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || |||| ||||| || | || || || ||||| || || ||||| | Sbjct 2083 TTTCGATGGTATCATTCGACTCCACCTCAAGAGTAATAGTCTTGCCTGTGAGAGTCTTAA 2142 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 2143 CGAAGATCTGCATCTT 2158 >seq21875 Length=4161 Score = 104 bits (114), Expect = 3e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||| |||| || | ||| |||||| || || ||||| || ||||| || | |||| Sbjct 231 CAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTTCTGCCGTC 290 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||||||| || ||||| || |||| ||||||||||| || | | |||||||| Sbjct 291 CTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGGATCCCTTCCTTGTC 350 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 | ||| || || | || | | ||||||| | || ||||| || | ||||| || Sbjct 351 CTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACCTCAAGGGTGATCGT 410 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || || || || ||||| || || || ||||| ||| Sbjct 411 CTTCCCGGTCAGGGTCTTCACGAAAATCTGCATCTTC 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542945179423920