Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq26061 150 2e-31 seq29849 102 8e-17 seq21875 98.7 1e-15 seq2393 93.3 4e-14 seq34640 82.4 8e-11 >seq26061 Length=1673 Score = 150 bits (166), Expect = 2e-31 Identities = 356/532 (67%), Gaps = 7/532 (1%) Strand=Plus/Plus Query 52299 GACACGCTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCA 52358 ||||||||| | || ||| || | ||||||||||| || ||||| ||||||| Sbjct 732 GACACGCTGTTCAAGGCGATCTCGACGGTGCCGTGCGTCACGAAGAAGGCCGAGTGGGCC 791 Query 52359 ATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATA 52418 || |||||||||| ||| |||||||| | || ||| | | || || ||||| Sbjct 792 ATCAAGTGGATCGGCAGCT---CCGCCACGTTCGCGGAGAGGCTCGTCGCGTTCGCAGCG 848 Query 52419 GTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGC 52478 || |||||| | || || ||||| || | | ||||| | | || | | || Sbjct 849 GTGGAGGGCATCTTCTTCTCCGGGTCGTTCTGCTCGATCTTCTGGCTGAAGAAGCGGGGG 908 Query 52479 ATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACG 52538 | ||||| || |||||||||| ||||||| || || || ||||| || ||||| Sbjct 909 CTGATGCCGGGGCTGACGTTCACGAACGAGTACATCTCCCGAGACGAGGGCATGCACTGC 968 Query 52539 GACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATC 52598 ||||| || ||||| |||||| | || || | | | | ||| | Sbjct 969 GACTTCGCCTGCCTGCTCTACAACAAGCTCGAGTACACACGCCTCAGCAGGGAGCGTGTG 1028 Query 52599 CTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCG 52658 || || | |||||| || || ||||| ||||||||| | |||| ||| |||||| Sbjct 1029 GTGGAATTGCTTGCGGAGGCTGTAGCCATCGAGAAGGAGTTTGTAACGGACGCACTGCCG 1088 Query 52659 GTCGAGCTGCTGGGCATGAAC-GCGCAGTCCATGTGCGA-GTACATCGAGTTTGTGGCGG 52716 ||| ||||| | || |||||| ||| | ||| |||| |||||||||||| ||| | Sbjct 1089 GTCAAGCTGATCGGGATGAACAGCGACCTG-ATG-GCGAAGTACATCGAGTTCGTGTGCG 1146 Query 52717 ATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGT 52776 | || ||||| ||| ||||| | ||||||| |||| | || ||||| || | Sbjct 1147 ACCGACTGTTCGTGACTCTCGGCTACGAGAAGTACTACAACACGGCGAACCCGTTCGACT 1206 Query 52777 TTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 | ||| | ||| || || | |||||||| ||||| ||||| ||||| || Sbjct 1207 TCATGGAGCTCATCTCCCTGCAAGGCAAGACAAACTTCTTCGAAAAGCGCGT 1258 >seq29849 Length=3363 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||||||| | || || |||||||||||| || || | Sbjct 1079 GACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCG 1138 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||||| ||||| || || || ||||| ||||| ||| || || | Sbjct 1139 AAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTCGACTTCACG 1198 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| || |||| || | ||| || || ||||| || || Sbjct 1199 TTCTCAATCGTGTCGTTGGACTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTC 1258 Query 138601 ACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 1259 ACAAAAATTTGCAT 1272 >seq21875 Length=4161 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || | ||||||||| || || |||| Sbjct 250 GACTCCTTCTGGATGTTGTAGTCGGCCAGCGTTCTGCCGTCCTCGAGCTGCTTTCCGGCG 309 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| || || | Sbjct 310 AAGATCAGTCTCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTAGACTTCACA 369 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | || | ||| || || ||||| || || Sbjct 370 TTCTCGATCGTGTCGTTTGACTCCACCTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTC 429 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 430 ACGAAAATCTGCAT 443 >seq2393 Length=4323 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | ||| | || | | | |||||||| || ||||||||||| | Sbjct 897 CCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 956 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | || | || || | || || || | | |||| || || || |||||||| || Sbjct 957 AGAGTCCTGCCA-TCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGG 1015 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | | ||| | ||| || ||||||||| Sbjct 1016 GATCCCCTCCTTGTCC-TGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCA 1074 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| |||||||| ||||| |||||||| Sbjct 1075 CCTCAAGGGTGATAGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 1123 >seq34640 Length=3269 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/204 (69%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || | |||||| || || || |||| Sbjct 1149 GACTCCTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCCGTCCTCCAGCTGCTTCCCGGCG 1208 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||||| ||||| || || || || || ||||| ||| || || | Sbjct 1209 AAGATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGACTTCACA 1268 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||||||| ||||||| ||| | || || || ||||| || || Sbjct 1269 TTCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGATTGTCTTGCCCGTCAGGGTCTTA 1328 Query 138601 ACAAAAATCTGCA---TGGCTTAT 138621 || || ||||||| |||||||| Sbjct 1329 ACGAAGATCTGCATCTTGGCTTAT 1352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496017910125360