Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_011373.1 Length=46872 Score E Sequences producing significant alignments: (Bits) Value seq1472 107 6e-19 seq8567 100 9e-17 seq1486 100 9e-17 >seq1472 Length=7306 Score = 107 bits (118), Expect = 6e-19 Identities = 148/202 (73%), Gaps = 10/202 (5%) Strand=Plus/Minus Query 23853 TGGGAGTTCGCCATCTCTGCGACCAAGAAGA-GGGAGGCGAACTGTACGCGGGTTGGCCG 23911 |||||| || ||| |||||||||||| || ||| ||||| |||||||| |||||| || Sbjct 867 TGGGAGCTCACCACATCTGCGACCAAGCAGGTGGGTGGCGAGCTGTACGCAGGTTGGTCG 808 Query 23912 ACCGGGGGTAAGGCTCCCGGCACACCCGAAGGTGTCCCACGCACAGCCCGCCATAAAGCG 23971 ||| ||| | ||||||| || | ||||||||||||| |||||||||||| Sbjct 807 ACCAGGGAATGGAAACCCGGCAGGGCCAGGGCCCTCCCACGCACAGCTCGCCATAAAGCG 748 Query 23972 AGGGCACaaaaaaaCGCC-CT---GCGGCGCTGTGCGCCTTACCGATTCGGGCGGCCAAG 24027 | ||| | || ||| || ||||| ||||||||| | | | |||||| |||| Sbjct 747 A----ACACGATAATGCCGCTTGCGCGGCACTGTGCGCCATTCTAACCCGGGCGACCAAA 692 Query 24028 CCCGACCGCTGAATTTGCAGCG 24049 ||||| ||||| || |||||| Sbjct 691 CCCGATCGCTG-ATGAGCAGCG 671 >seq8567 Length=29384 Score = 100 bits (110), Expect = 9e-17 Identities = 119/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 43281 GGCGCGGAAGGCTATCGCAGACCGGGAGCGGAGGGAGATCAGGGTTCGGAAGGAGCGGCT 43340 |||||| ||||| | || || || || | ||| |||| ||| || |||||| ||| Sbjct 20622 GGCGCGCAAGGCCCTGGCCGATATCGAACGCAAGGACATCAAGGTCCGCAAGGAGAAGCT 20563 Query 43341 GAAGAGCAGGGCGGATCACCTGCGCGAGGCTCAAGCTGCGTTCAACGAGTTCATTCGCCT 43400 ||||||||||||||||||||| || || || || | ||| | ||||| | | | ||||| Sbjct 20562 GAAGAGCAGGGCGGATCACCTCCGAGAAGCCCAGGTAGCGGTGAACGAATACGTGCGCCT 20503 Query 43401 GCGCGACGCCGACCAGCCGTGCATCAGTTGTGGACGCCAC 43440 ||| || || ||| ||| |||||||| || ||| |||| Sbjct 20502 GCGTGATGCGCACCTGCCCTGCATCAGCTG-CGACTCCAC 20464 >seq1486 Length=15415 Score = 100 bits (110), Expect = 9e-17 Identities = 149/203 (73%), Gaps = 20/203 (10%) Strand=Plus/Minus Query 23863 CCATCTCTGCGAC-CAAGAAGAGGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGGGTA 23921 ||||| |||||| | | || ||| ||| | |||||||| |||| || ||||||| | Sbjct 13124 CCATCGCTGCGAAACGACAATCGGGTGGC-AGCTGTACGCAGGTTCGCAGACCGGGACTC 13066 Query 23922 -AGGCTCCCGGCACACCCGAAGGTGTCCCACGCACAGCCCGCCATAAAGCGAGGGCACaa 23980 |||| ||||||| |||||||||| |||| ||||||||| ||||||| ||| || || Sbjct 13065 TAGGCACCCGGCATACCCGAAGGTATCCCGCGCACAGCC-GCCATAACATCAGG-CATAA 13008 Query 23981 aaaaaCGCCC-------TGCGG----CGCTGTGCGCCTTACCGATT---CGGGCGGCCAA 24026 |||| ||||| || || ||||||||| || | | || ||||| || || Sbjct 13007 AAAAGCGCCCGCTATCTTGTGGTGGACGCTGTGCGTCT-AGAGTTTACCCGGGCTGCGAA 12949 Query 24027 GCCCGACCGCTGAATTTGCAGCG 24049 |||| |||||||||||||||| Sbjct 12948 ACCCGGTCGCTGAATTTGCAGCG 12926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149798656999204