Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_011611.1 Length=36885 Score E Sequences producing significant alignments: (Bits) Value seq8416 257 4e-64 >seq8416 Length=35894 Score = 257 bits (284), Expect = 4e-64 Identities = 295/394 (75%), Gaps = 2/394 (1%) Strand=Plus/Plus Query 1404 GTAAAGCCGGCGCGGGG-GCTTGAACATGGCCCGCCGCAAAGACGATCGAACGCTGGACA 1462 ||||||| ||| || | || |||||||| || ||||| || |||| | |||| Sbjct 1429 GTAAAGC-GGCAAGGAGTGCCTGAACATGCGTAACCAAAAAGATGACAGAACATTAGACA 1487 Query 1463 TCTTCGATGTTCCGCAGCCGGCCCTCGCTATACCTGGTGAGTGCAACTACGCCGCTCAAG 1522 ||||| |||||||||||||| || ||||||| ||| | ||||||| ||||| || | Sbjct 1488 TCTTCTCTGTTCCGCAGCCGGTGCTTTCTATACCCGGTCACGGCAACTATGCCGCCCAGG 1547 Query 1523 TCAGCGAACTGGTCAGCGAAATTCTGAAGGCTTGCGACCTTGACCGTTACGAGGTCGCCG 1582 ||||||| |||||||||||| | || || | | |||| | ||||| || ||| | || | Sbjct 1548 TCAGCGAGCTGGTCAGCGAAGTCCTCAAAGAGTCCGACTTGGACCGCTATGAGATTGCGG 1607 Query 1583 CCCGGATGTCGCGCCTGTCCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGA 1642 | || ||||| ||||| || ||||| ||||| |||||||||||| | ||||||||||| | Sbjct 1608 CTCGCATGTCACGCCTTTCGGGCGACGACGTTAGCAAGAACATGTTAGACGCCTGGTCAA 1667 Query 1643 GTCCCGCCCGAACTGATCACAACTTGCCTTTCTACCGCGCCGCCCTTCTGGAGGACGTCT 1702 |||| ||||| | ||||||||| | ||| | || || || || | |||||||| |||| Sbjct 1668 GTCCTGCCCGTGCAGATCACAACCTACCTCTGTATCGAGCTGCTTTGCTGGAGGAAGTCT 1727 Query 1703 GCGCGAGCCATCTGCTGACCAACTGGCTGGTCGATGTACGTGGCGGCCGCGTGGCTTACG 1762 | || |||||| | ||||| || |||| || | | || || ||||| || ||||| | Sbjct 1728 GTGCAAGCCATGTCCTGACGAATTGGCAAGTACACCTGCGCGGTGGCCGGGTCGCTTATG 1787 Query 1763 GCCGCGATGCACTGCTCGCCGAACTGGGCCGCCT 1796 | ||||| || ||| ||| ||| | || ||||| Sbjct 1788 GGCGCGAGGCTCTGGACGCGGAAATAGGTCGCCT 1821 Score = 149 bits (164), Expect = 1e-31 Identities = 123/147 (84%), Gaps = 5/147 (3%) Strand=Plus/Plus Query 9448 AGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTAGTCCGGTACTGATG 9507 ||||||||||||||||| || | |||||||||||||||||||||| |||||||||||||| Sbjct 8689 AGCGAAACCGCCCCGGCGTG-CTGGGACGGTCTGCCGGACGTGGTTGTCCGGTACTGATG 8747 Query 9508 AGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGCCGCCTGGCGCGGGA 9565 |||||||||||||||| ||||| ||| | |||| ||||| ||||||||| || || Sbjct 8748 AGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCCAAACCCGCCTGGCACGCGA 8805 Query 9566 ACGCCAACGGGCGAAGCGCGAGCGCGA 9592 ||| |||| || |||| ||||||| Sbjct 8806 ACGTAAACGTGCCCAGCGTAAGCGCGA 8832 Score = 141 bits (156), Expect = 2e-29 Identities = 289/425 (68%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 177 ATCCAGCGGCCTGCCCATACCACGCGACCAATGATGTCGATTGCCTCTAGGTCTTGCTTG 236 ||||| | ||| ||||| || || || || | || || | | | |||| || || Sbjct 255 ATCCAACCGCCCGCCCAAACAACACGTCCCACAATCTCTAGGTCATTCAGGTTTTCTTTA 314 Query 237 GACACGTACATCGTCTGGTAGGCCGAATTAGCGCTAATGATCGCTAG---ACCGCCATTG 293 || || | ||| ||||| || |||| || ||||| || | |||| ||||||| Sbjct 315 GAAACCTTCATGGTCTGATAAGCCGCGTTTGCGCTGATAACTGCTACGCCACCGCCA--- 371 Query 294 ATTTGCCGCTGGATTCGCTTGGCGTATAGGTGGTCATCCAACCGAATGACGTAGATAG-- 351 || || || || | ||||||||||| || ||||||||||| ||||| |||||||| | Sbjct 372 ATCTGGCGTTGCAGCCGCTTGGCGTACAGATGGTCATCCAAGCGAATAACGTAGATGGCT 431 Query 352 -CCTCGTCGCGGACCTCGCCGCAGCTGTGGTCAATCATCACCGTATCACCATCGCTCAAC 410 || | || || || | || |||||||| |||| ||| || || ||||| |||| | Sbjct 432 TCCCCTTCCAGG--CT-GTTGCGACTGTGGTCGATCAACACAGTGTCGCCATCACTCAGC 488 Query 411 AGCGGCTCCATTGAGTCACCGCCGATGCGAACGGCTGACATATTCGCTATCTCCAGACCT 470 | | |||||| ||||||||| | | || | || || | |||| ||||| || Sbjct 489 ACCCCCTCCATAGAGTCACCGTCCACCCGGATAGCCGAGAGCTTCGACGGCTCCAATCCC 548 Query 471 TGCTTCCGCAAGCTGTAGCGAGTGAACGCCAGCTTGGCCAAGGTCCGCGCGCCCTCCATC 530 ||||| ||||| ||| || || ||||| | | | ||| || ||||| || Sbjct 549 TGCTTGCGCAATGAGTAAGTGGTAAAAGCCAGGTGCGTAAGAACCCGAGCCCCCTCTGTC 608 Query 531 CAGGAACCGTGGCCAGCACTCACCCGCGCGTCGTAGAGGGGTACGTAGGCGTAGGTGTCA 590 || | ||||| || ||||| || |||||||| ||||| || ||| ||| ||||| Sbjct 609 CATGCCCCGTGACCGGCACTGCAACGAGCGTCGTAAAGGGGGACATAGCTGTATTTGTCA 668 Query 591 TCCTC 595 ||||| Sbjct 669 TCCTC 673 Score = 109 bits (120), Expect = 1e-19 Identities = 221/322 (69%), Gaps = 11/322 (3%) Strand=Plus/Plus Query 9839 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9898 || ||||||||||||||| | || || |||| ||||| ||||| ||||| ||| | Sbjct 9061 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGATGAAACCTACCGCGCCTTGTTG 9120 Query 9899 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTA 9958 | ||||| || | ||||| |||||||| || | ||| |||||||||| | ||| Sbjct 9121 GGCCGCGTGGCAGATGTGCGTTCGGCCAAAGATCTGACGCCACGCCAGATCGGCGCGGTA 9180 Query 9959 CTGGTCGAACTCCAGCGCCTGGGCTGGAAAC---CGAAGAGCAACCGGCAAGGCCGGGCG 10015 |||| ||| || |||||||||||| | | | ||| || |||||| | || Sbjct 9181 CTGGCCGAGTTCGCTCGCCTGGGCTGGGAGCCTACAAAGGCTAAAAAGCAAGG--GCGCA 9238 Query 10016 ACGCCAAAAGTGCCG---CAAAACCG-GCAAACCGTGCTGCGTAAAATCACCGCGCTCCT 10071 | | || |||| || | | |||| | ||| | || || | ||||| || | || Sbjct 9239 AAG-CACCAGTGGCGGCTCCAGACCGTGTAAAAC-TGGTGGGGAAAATAGAGGCCTTTCT 9296 Query 10072 GGCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGT 10131 || || | || ||||| ||| |||||| ||||||| |||||||||| |||| Sbjct 9297 CTCCGAGGCAAAGCGTTCCTGGGCCTATGCCGACGGTATGGCCCTGCGCATGTTCAAGGT 9356 Query 10132 CGAGCGGGTCGAGTGGCTGGAC 10153 ||| || ||||| ||||| ||| Sbjct 9357 CGAACGCGTCGAATGGCTAGAC 9378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117855214469182