Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq29849 140 3e-28 seq34640 123 2e-23 seq21875 113 4e-20 seq2393 95.1 1e-14 >seq29849 Length=3363 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | | ||||| ||| | || | || ||||| |||||||| ||||| ||| | Sbjct 1046 CCACCTCTGAGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCA 1105 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || || || ||||| ||| |||||||||||||||| || || || Sbjct 1106 AGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGGCGGG 1165 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| ||| ||| ||| | | || | ||||| | ||||||| Sbjct 1166 ATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGACTCGACT 1225 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || |||||||| ||||| Sbjct 1226 TCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCAT 1272 >seq34640 Length=3269 Score = 123 bits (136), Expect = 2e-23 Identities = 174/244 (71%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 126885 CTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGC 126944 ||||||| || | || | ||||| || | ||| ||||| || || || ||||| || Sbjct 1114 CTCCACCACGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 1173 Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004 | | ||| | || || ||||| || || ||| ||||||| |||||||| || || | Sbjct 1174 CAAGCGTCCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCG 1233 Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 | ||||||||||||||| ||| ||| ||| | | |||| |||||| | ||||| Sbjct 1234 GGATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGA 1293 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA---TGGCTTATT 127121 | |||| || | || ||||| ||||| || || || || ||||||| ||||||||| Sbjct 1294 CCTCGAGCGTGATTGTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCATCTTGGCTTATT 1353 Query 127122 TATT 127125 | || Sbjct 1354 TCTT 1357 >seq21875 Length=4161 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || ||| |||| || | || ||||| || || || ||||| ||| || Sbjct 217 CCACCACGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 276 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | || || ||||| ||||| ||| |||||| || |||||| ||||| || Sbjct 277 AGCGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGG 336 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| || ||| | | |||| ||||| | ||| || Sbjct 337 ATCCCTTCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACC 396 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| || |||||||| || || || ||||||||||| Sbjct 397 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 443 >seq2393 Length=4323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || ||| || | ||| |||| ||| || || Sbjct 927 GTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCTAACTGCTTGCCT 986 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||| ||||| || || || || |||||||||||| || ||| ||| Sbjct 987 GCAAAGATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGAATCTTCGACTTC 1046 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| ||| || | ||| || || | ||| | || ||||| || |||||| Sbjct 1047 ACATTTTCGATGGTATCATTCGACTCCACCTCAAGGGTGATAGTCTTGCCAGTAAGAGTT 1106 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 1107 TTCACAAAGATCTGCAT 1123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475266538587120