Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq32405 174 4e-39 seq8566 82.4 2e-11 >seq32405 Length=7639 Score = 174 bits (192), Expect = 4e-39 Identities = 456/683 (67%), Gaps = 22/683 (3%) Strand=Plus/Minus Query 8437 GAGTTGATTATCGTCGGCGGACGGCCGTCGATGGGAAAGACCTCCCTCGCAATGAATATC 8496 || ||||| ||||||| ||| || ||||| ||||| || ||| || |||| ||||| | Sbjct 3431 GACTTGATCATCGTCGCCGGCCGTCCGTCCATGGGTAAAACCACCTTCGCCATGAACCTG 3372 Query 8497 GCAGAGCATGTCGCCAT-CGTGTCGAGATTGCCCGTCGGCGTCTTGTCGCTGGAAATGCC 8555 | || | | || | || ||| | ||| | | || | || ||||| ||||| Sbjct 3371 GTGGAAAACGCCGTGTTGCGCAGCGACAAGGCCGTACTG-GTTTACTCCCTGGAGATGCC 3313 Query 8556 GACCGAACAGTTGACCATGCGCATGCTGGCGTCGACATCCCGTATCAGCCAAAACAGGCT 8615 |||| | ||| |||||| ||| || |||| ||| ||| ||| | || | | Sbjct 3312 AGGCGAATCGCTGATCATGCGTATGTTGTCGTCCCTGGGCCGCATCGACCAGACCAAGGT 3253 Query 8616 GCGAACCGGTCGCCTCGAGGATGACGACTGGCCGCGCCTGACGCGTGGCG-TCGAGCTGA 8674 ||| |||| ||||| || || |||||||||||||| ||||| | |||| || | ||| Sbjct 3252 GCGTGCCGGCCGCCTGGAAGACGACGACTGGCCGCGGCTGAC-CTCGGCGGTCAACCTGC 3194 Query 8675 TGGCCGACGCGCCCGTGCATATTCTCGATAGCTCCGCG---ATCACCCCGTCG-AAATTC 8730 | | ||| | | || || ||||| | ||||| |||| ||||||| |||| | Sbjct 3193 T---CAACGATCGCAAGCTGTTTATCGATGACACCGCGGGCATCAGCCCGTCGGAAATGC 3137 Query 8731 AAGTCCGAGTTGCGG-CGCTTGTATCGCGAATGCGGCCGGCTCGGGATGATTGTCGTTGA 8789 | || || | | ||| || || || |||| | | |||| | | || Sbjct 3136 GCG--CGCGTACCCGACGCCTGGTGCGTGAGCACGGCGATATTGCCCTGATCATGATCGA 3079 Query 8790 CTACCTGCAGCTGATGTCGGGTGACGG----CGGCGGATCTGAAATGCGGGCCACCGAGG 8845 |||||||||| ||||| | | | ||| | |||| ||| | ||| ||| |||| Sbjct 3078 CTACCTGCAGTTGATG-CAGATCCCGGGCTCCAGCGG---TGACAGCCGGACCAACGAGA 3023 Query 8846 TCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCG 8905 | |||| || || ||| | | ||| | || |||||| || || ||| | | | Sbjct 3022 TTTCCGAGATTTCCCGCTCGTTGAAAGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTTG 2963 Query 8906 CGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCG 8965 | ||||||||||| || ||| || ||| | || || ||||| || || ||| |||| Sbjct 2962 CCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGCCCGATCAACTCCG 2903 Query 8966 ATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCG 9025 | |||| || || || ||||||||||||||||| ||||||||| | || | ||||| | Sbjct 2902 ACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTTCGTATACCGGG 2843 Query 9026 ATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGC 9085 | ||||| ||| |||| || | || || || | || |||||||| || | || | Sbjct 2842 ACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATCATTATCGGTAAAC 2783 Query 9086 AGCGAAACGGGCCGATTGGCACC 9108 |||| |||||||| || |||||| Sbjct 2782 AGCGTAACGGGCCAATCGGCACC 2760 >seq8566 Length=6269 Score = 82.4 bits (90), Expect = 2e-11 Identities = 187/277 (68%), Gaps = 16/277 (6%) Strand=Plus/Minus Query 31161 GCCGCCGGCCGTTGCGTCGCTCAAGGCCACCGGCATCG---TGTTCGGGATCAACCTGGC 31217 ||||||||| || |||| || | ||||| || || ||||||| ||| | || Sbjct 2260 GCCGCCGGCGGT---GTCGTTCCTGACCACCTCCAGCGAGTTGTTCGGCATCGGCTTGAA 2204 Query 31218 TTGGGCGTTCCCGGGCGACGGTACGGCCGGCGATACGCAGCGCACCGAGCTCTGGTATAG 31277 |||| ||||| | | || ||| ||||| |||||||||||||||||||| | Sbjct 2203 GTGGGGTTTCCCTGCTGGCG------CCGAGGATACCCAGCGCACCGAGCTCTGGTACAA 2150 Query 31278 CCGCACGCCGAGCCGCGACGATGCAATCAAGCTGTCGGATTACGCGTATCCGCAGGCGTC 31337 || ||| | || || || || | |||||| |||||| || || |||||||| | Sbjct 2149 CCCGACGAACAACCTCGGCGCCGCGACGAAGCTGGCGGATTTGGCATACCCGCAGGC--C 2092 Query 31338 GAC-GTC-CTTGCAAGGGCTCGCGGTCGGCCAGGTGTTCTATTTCTGGGCTCGGCTCGTC 31395 ||| || | |||| ||| || ||| | ||||| |||||||| || || || Sbjct 2091 GACTATCGCATGCAGTCGCTGCTGGCGGGCGCGCAGTTCTTCTTCTGGGCGCGCCTGGTG 2032 Query 31396 GACACGTCAGGAAACGTCGGGCCGTGGTATCCGGCGG 31432 ||| | || ||| ||||||||| ||||||| || Sbjct 2031 GACCGCACCGGCAACATCGGGCCGTTCTATCCGGTGG 1995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127485904912548