Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2393 152 1e-31 seq21875 150 4e-31 seq29849 141 2e-28 seq34640 129 1e-24 >seq2393 Length=4323 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || |||||||| |||| |||||||||||||| |||||| |||||| Sbjct 912 AGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCT 971 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | |||||| || || |||||||| || ||||||||||| || || || ||| Sbjct 972 TCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTCC 1031 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| ||||| ||| || | | || || || | ||||| ||| Sbjct 1032 TGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACCTCAAGGGTGATAGTC 1091 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||||||||| || || Sbjct 1092 TTGCCAGTAAGAGTTTTCACAAAGATCTG 1120 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || |||||||| |||| |||||||||||||| |||||| |||||| Sbjct 1944 AGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCT 2003 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | |||||| || || |||||||| || ||||||||||| || || || ||| Sbjct 2004 TCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTCC 2063 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| ||||| ||| || | | || || || | || || ||| Sbjct 2064 TGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACCTCAAGAGTAATAGTC 2123 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || || || || Sbjct 2124 TTGCCTGTGAGAGTCTTAACGAAGATCTG 2152 >seq21875 Length=4161 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||||| ||| |||||||| || |||||||| |||| ||||||||| |||| || Sbjct 223 CGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTT 282 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || || || |||||||||||||||||||| || | ||||||||| || || ||| Sbjct 283 CTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGGATCCCT 342 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| ||||| ||| || || || | Sbjct 343 TCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACCTCAAGG 402 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || || ||||| ||||| || Sbjct 403 GTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTG 440 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| |||||||||||||||||| | || || || || || ||||||| |||||| |||| Sbjct 318 ACTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACGCTGGCCGACTACAACATCCA 259 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||| ||||| || || ||||| || |||||||| || Sbjct 258 GAAGGAGTCCACCCTCCACCTGGTCTTGAGACTCCG 223 >seq29849 Length=3363 Score = 141 bits (156), Expect = 2e-28 Identities = 166/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||| ||| ||||||||||| |||||||||||||| | ||||||||| || | || | Sbjct 1055 AGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGA 1114 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || || || |||||||| |||||||| | ||||||||||| || || ||||| Sbjct 1115 CCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCC 1174 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||||||| || | ||||| | | || || || | ||| Sbjct 1175 TTGTCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGACTCGACTTCGAGAGTG 1234 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 |||||||| || || || || |||||||||||||| |||||| Sbjct 1235 ATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTG---CATTTT 1275 >seq34640 Length=3269 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| ||||||||| || | ||||| || || Sbjct 1131 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCCGTCC 1190 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| | ||||||||||| || || || || ||| Sbjct 1191 TCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 1250 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||| | | || || || | |||||| ||| Sbjct 1251 TGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGATTGTC 1310 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || || || || Sbjct 1311 TTGCCCGTCAGGGTCTTAACGAAGATCTG 1339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178326269275671