Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq29849 163 3e-35 seq34640 154 2e-32 seq21875 123 3e-23 >seq29849 Length=3363 Score = 163 bits (180), Expect = 3e-35 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 || || ||||| | |||| ||| || || | || ||||||||| || ||||||||| Sbjct 1043 TTACCACCTCTGAGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCG 1102 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 | || ||||| |||| ||||| ||||| || ||||| ||||| ||||||||||| | | Sbjct 1103 GCAAGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGGC 1162 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || ||||||||| ||||||| ||| | || | | ||||||| | || || Sbjct 1163 GGGATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGACTCG 1222 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCACAAA 46603 || || | ||||| || ||||| ||||| || || ||||| |||||||||||||| ||| Sbjct 1223 ACTTCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCATTTTGCAAAAA 1282 Query 46604 CAA 46606 || Sbjct 1283 AAA 1285 >seq34640 Length=3269 Score = 154 bits (170), Expect = 2e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| |||| || |||||| ||||| |||||||| | || || | | Sbjct 1127 ACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCC 1186 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| |||||||| ||||| ||||||||||| | ||| | || |||||| Sbjct 1187 GTCCTCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTT 1246 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||||| ||| | || | | ||||| |||| || || || | |||||| Sbjct 1247 GTCCTGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGAT 1306 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 1307 TGTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCATCTTG 1346 >seq21875 Length=4161 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 ||| ||||| || | || |||||| ||||| |||||||||| || || | |||| Sbjct 231 CAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTTCTGCCGTC 290 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 ||||||||||| |||||||| |||| | ||||||||||| ||| | | |||||||| Sbjct 291 CTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGGATCCCTTCCTTGTC 350 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | || | | ||||||| | || ||||| || | ||||| || Sbjct 351 CTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACCTCAAGGGTGATCGT 410 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || ||||| || || || || || ||||| || Sbjct 411 CTTCCCGGTCAGGGTCTTCACGAAAATCTGCATCTT 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564959928236760