Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq26061 284 1e-71 seq29849 125 7e-24 seq34640 122 9e-23 >seq26061 Length=1673 Score = 284 bits (314), Expect = 1e-71 Identities = 604/895 (67%), Gaps = 20/895 (2%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 || || || || || || || || | || ||| |||||| ||| || || || ||||| Sbjct 1252 TTTTCGAAGAAGTTTGTCTTGCCTTGCAGGGAGATGAGCTCCATGAAGTCGAACGGGTTC 1193 Query 132685 GCTGTGTTGTAGTGCTTG--GT-GCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 || |||||||||| ||| || ||||| ||| |||| ||| | |||| ||||||| Sbjct 1192 GCCGTGTTGTAGTACTTCTCGTAGCCGAGA--GTC-ACGAACAGTCGGTCGCACACGAAC 1136 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCG 132801 |||||||| | || ||| |||| || | || | ||| |||||||| || || Sbjct 1135 TCGATGTACTTCGCCATCAGGTCGCTGTTCATCCCGATCAGCTTGACCGGCAGTGCGTCC 1076 Query 132802 GTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCG 132861 || | ||| | ||||||||| || || || | | | |||| || ||| || | Sbjct 1075 GTTACAAACTCCTTCTCGATGGCTACAGCCTCCGCAAGCAATTCCACCACACGCTCCCTG 1016 Query 132862 CTCGGCCGT---TGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918 || | ||| | | | | | ||| | | || ||| || |||||||| |||| |||| Sbjct 1015 CTGAGGCGTGTGTACTCGAGCTTGTTGTAGAGCAGGCAGGCGAAGTCGCAGTGCATGCCC 956 Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| | ||| ||| ||||| |||| |||| || ||||| || || || || || Sbjct 955 TCGTCTCGGGAGATGTACTCGTTCGTGAACGTCAGCCCCGGCATCAGCCCCCGCTTCTTC 896 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| || || | | ||| || || ||||||| |||||| || || ||||| || Sbjct 895 AGCCAGAAGATCGAGCAGAACGACCCGGAGAAGAAGATGCCCTCCACCGCTGCGAACGCG 836 Query 133039 ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 || || | ||| ||||||||| | |||| ||||||| | ||||| |||||| Sbjct 835 ACGAGCCTCTCCGCGAACGTGG---CGGAGCTGCCGATCCACTTGATGGCCCACTCGGCC 779 Query 133099 TTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG-- 133156 || | |||||||||||| ||| ||| || || |||| | || ||| || || Sbjct 778 TTCTTCGTGACGCACGGCACCGTCGAGATCGCCTTGAACA----GCGTGTCTTTTTCGGC 723 Query 133157 --AGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCAT 133214 | | ||| ||||||||||| ||| | || || || | ||| || || Sbjct 722 GTTGTTCTTGATGTACGTGTCGATGAGCAGACTGTACGTCTCGGAATGGATGTTTTCGAT 663 Query 133215 GGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACG 133274 ||||| || || ||||| |||||||| |||||| | ||| | || | ||| || Sbjct 662 CGCGATCTGGAACCCGTAGAAGCACCGGGCCTCGGGGATCTGGATGTCGTTCATGAACCG 603 Query 133275 CTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTT 133334 | | || || ||| ||||||||||||| |||||||| || || || ||||| | Sbjct 602 CGAAGCGAGGTTCTCGAGGACGATGCCGTCGGAAGCGGCGAAGAACGCGAGGACGTGGGT 543 Query 133335 GATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 |||||| || ||||| |||||| | || ||||||||| | ||| | |||||| Sbjct 542 GATGAAGTGTCGCTCCCCGTCGTTGAGGCCCTCCCAGTCCTTCAGGTCGGCCGCCAGGTC 483 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||| ||||| ||||| || || ||||| || |||||||| ||| ||||||| Sbjct 482 AACCTCTTCGACCGTCCAGAATGAGGCCTCCGCGGCCTTGTACATCTGCCAGATGTCCGG 423 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 | || ||||| || | || ||| | ||||| || || |||||||||| Sbjct 422 GTGCTGGATGGGGAACAAGACGTACCTGTACGGGTTCTCCTTCAGCAGCGGCTCC 368 >seq29849 Length=3363 Score = 125 bits (138), Expect = 7e-24 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || || || || || || ||||| || ||||| |||| |||||| || Sbjct 1275 AAAATGCAAATTTTTGTGAAGACACTGACCGGCAAGACGATCACTCTCGAAGTCGAGTCC 1216 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | ||||| | || |||| | || || |||| ||||| || || || |||||| | Sbjct 1215 AACGACACGATTGAGAACG-TGAAGTCGAAGATCCAGGACAAGGAAGGCAT-CCCGCCTG 1158 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| | || | ||| || || || || || |||| |||||||| ||||| Sbjct 1157 ACCAGCAGCGATTGATCTTCGCAGGAAAGCAACTCGAGGACGGTCGCACCCTTGCCGACT 1098 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| |||||||| |||| || || | |||||||| | ||||| || Sbjct 1097 ACAACATTCAAAAGGAGTCGACCCTCCACCTTGTGCTGCGACTCAGAGGTGG 1046 >seq34640 Length=3269 Score = 122 bits (134), Expect = 9e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || |||||||| || ||||| |||| |||||| | Sbjct 1345 AAGATGCAGATCTTCGTTAAGACCCTGACGGGCAAGACAATCACGCTCGAGGTCGAGTCG 1286 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | |||| | | | | | || || |||| ||||| ||||| || |||||| || Sbjct 1285 AATGACACCATCGAGAATGTGAAGTCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGA 1227 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| |||||| | || | ||| || || |||||||| |||| | || || ||||| Sbjct 1226 CCAGCAGCGGTTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCAGGACGCTTGCGGACTA 1167 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||||||||| ||||||| ||| || | || || Sbjct 1166 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGTGGTGG 1116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499926383617920