Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1662 127 3e-24 seq37858 104 3e-17 seq428 95.1 2e-14 seq5074 89.7 7e-13 seq34427 86.0 8e-12 >seq1662 Length=13521 Score = 127 bits (140), Expect = 3e-24 Identities = 200/281 (71%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| |||| ||||| | ||| || || || || || | ||| ||||| || || || Sbjct 9306 ATCGAAGTCTTGTCCACCAAGGTGCGTGTCTCCGGCTGTTGATTTCACTTCGAAAATGCC 9247 Query 7516 TCCTTCAATGTTTAACAAC-GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 ||||| | |||| | ||| ||||| ||||||||||| ||||| |||| | || Sbjct 9246 GTTGTCAATACCGA-CAACTGTAACGTCAAAAGTACCACCACCAAGGTCGAAAACCAATA 9188 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || |||||||| || |||||||| |||||||| || | || || || ||||||| Sbjct 9187 CATTGACTTCGTCGTCATTCTTCTTATCCAGACCGTATGCCAATGCTGCGGCTGTTGGTT 9128 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGT 7693 | || || | ||| ||| | ||| || || | | ||| ||| |||| || || | Sbjct 9127 CGTTGATGACACGCAGAACCTGCAGCCCGGCGACT-TCGCCAGCAGCTTTGGTGCGTTCT 9069 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734 || || ||||||||||||||| || || || | |||||| Sbjct 9068 CGCTGGCCATCGTTAAAGTAGGCAGGAACTGTAATGACCGC 9028 >seq37858 Length=73037 Score = 104 bits (114), Expect = 3e-17 Identities = 172/248 (69%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 ||||| || || ||||| ||||||||||| ||| || || || | |||| | ||| Sbjct 10105 GAAACGTCGAAGGTACCGCCACCCAGGTCGTAAACGATCACA---GTGTGGTCGCCCTTG 10161 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||| || | |||||| || | ||| || || |||||||| || || ||||| | Sbjct 10162 GCCTTGTCCATACCGTAGGCCAGAGCGGCTGCGGTTGGTTCGTTGATGATACGTTTCACG 10221 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 | ||||||||||||| | || ||||| ||||| || || || ||||| |||||| Sbjct 10222 TCCAGGCCAGCAATACGGCCGGCGTCTTTGGTCGCCTGGCGCTGGCTGTCGTTGAAGTAG 10281 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 ||||| || || | ||||| || || || | |||||| || ||| ||| | | Sbjct 10282 GCCGGAACGGTGATCACCGCTTCAGTCACGGCTTCACCGAGGTAGTCTTCGGCGGTTTTC 10341 Query 7775 TTCATTTT 7782 ||||| || Sbjct 10342 TTCATCTT 10349 >seq428 Length=2254 Score = 95.1 bits (104), Expect = 2e-14 Identities = 233/353 (66%), Gaps = 3/353 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||||||||| || || || ||| || | |||||| |||| || Sbjct 1142 TCGAAGTCCTCTCCACCCAAGTGCGTGTCTCCGTTGGTGGCCTCGACTTCGAAGAACCCA 1083 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | || ||| || || || |||||||| || ||||| || | || || Sbjct 1082 TTGTCGATCGACAGCAGCGACACGTCGAAGGTACCACCGCCAAGGTCGAAGACCAGGACC 1023 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || || | | | || || ||||| ||||| || || || || ||||| Sbjct 1022 TTCTTCTCAGCGGC---GGAGCTGTCCAGGCCGTAGGCGATGGCGGCAGCGGTGGGTTCG 966 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | || || || ||| || || | || || | || | || || || || Sbjct 965 TTGAGGATGCGGAGGACGTTGAGTCCGGAGATCGTGCCTGCGTTGCGGGTGGCCTGACGC 906 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| ||||| || ||||| || |||||||||| | |||| | || ||||| Sbjct 905 TGGGCGTCGTTGAAGTACGCGGGGACGGTGACGACCGCGTTCTTGACGTCCTGGCCGAGG 846 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 |||| || || | || ||||| || || | ||||| || ||||| || Sbjct 845 TACGTTTGGGCCACCTCCTTCATCTTCTGGAGGATCATCGCGGAGATCTCCTC 793 >seq5074 Length=2057 Score = 89.7 bits (98), Expect = 7e-13 Identities = 166/243 (68%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 105867 CGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAG 105926 |||||| | ||||| |||||| | || ||||| || ||||||| | | | | | || Sbjct 365 CGCACAGTTCTTTACCGTATCGAAGATTCCGTCAATGGAATCTTCCCTGATAGTAGTAAG 306 Query 105927 GAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATG 105986 ||||| ||||| || ||| |||||| |||||||| ||||| ||||| ||||| Sbjct 305 AAAACAACTAGACATCTGGGGTAAATTTGTACCCGCATTGAATAGAGTAGGTGTAGCATG 246 Query 105987 AATGAACAAACCTTTCGATAACGCTTCGTATGTTTCCAGGACGTGATCAATA---TCG-- 106041 ||| || | || | || | | | |||||||| || || | || |||| ||| Sbjct 245 AATAAAATATCCCATAGACATCAATCGATATGTTTCGAGAACATCATTAATACTTTCGGG 186 Query 106042 ------TGTCC-ATGAATACCAATAGCGACGCGCATATAGAGATATTGGGGTGTTTCAAT 106094 |||| |||||| || || ||| |||| ||| | |||||| ||||||||||| Sbjct 185 ATTATCTGTCAGATGAATCCCGCAAGAGACTCGCAAATACATATATTGTGGTGTTTCAAT 126 Query 106095 AAT 106097 || Sbjct 125 TAT 123 >seq34427 Length=4033 Score = 86.0 bits (94), Expect = 8e-12 Identities = 180/264 (68%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 105810 ATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGC 105869 ||| ||||| | | ||||||||||| || || || || || ||| ||| ||| Sbjct 3192 ATTGGCACGGATGTTGTGAACGTGTATGCCGATGCCGCCGGCAGTCTTCGAGATCATCGC 3133 Query 105870 ACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAA 105929 || || | || ||||| || || |||||| || ||||| | || | ||||| Sbjct 3132 GCAGGTCTTCAGCGTCTCGTAGATCCCCTCGATAGAGTCGTCCTTCATGGCTACAAGGAA 3073 Query 105930 ACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAAT 105989 || || |||||||| || ||||||| || || ||||||| ||||| |||||||| | Sbjct 3072 GCATGACGACATTTGCGGGTTGGGTGTCCCTGCGTTGAACAACGTTGGGGTTGCATGGGT 3013 Query 105990 GAACAAACCTTTCGATAAC-GCTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCA- 106047 ||| ||| || | | |||| ||| ||||||| ||| | || || | | || | Sbjct 3012 GAAATCACCGTTGCTGAGCAGCTT-GTACGTTTCCACGACCTTTTCGATGT--TCTCGAA 2956 Query 106048 -TGAATACCAATAGCGACGCGCAT 106070 || || ||||| | ||||||||| Sbjct 2955 GTGGATGCCAATGGAGACGCGCAT 2932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634819893886920