Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2393 104 2e-17 seq34640 87.8 1e-12 seq29849 84.2 1e-11 >seq2393 Length=4323 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| || || ||||| ||||| ||||| | || | | |||| || Sbjct 914 AACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTC 973 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 | ||| || || ||||| || |||||||||||||| |||| | |||||||||||| Sbjct 974 TAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTG 1033 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| || || | | || | ||| | ||| || || | ||| || || || Sbjct 1034 AATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACCTCAAGGGTGATAGTCTT 1093 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| ||||||||||||||||| Sbjct 1094 GCCAGTAAGAGTTTTCACAAAGATCTGCAT 1123 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| || || ||||| ||||| ||||| | || | | |||| || Sbjct 1946 AACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTC 2005 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 | ||| || || ||||| || |||||||||||||| |||| | |||||||||||| Sbjct 2006 TAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTG 2065 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| || || | | || | ||| | ||| || || | || || || || Sbjct 2066 AATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACCTCAAGAGTAATAGTCTT 2125 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || ||||||||||| || ||||||||||| || Sbjct 2126 GCCTGTGAGAGTCTTAACGAAGATCTGCATCTT 2158 >seq34640 Length=3269 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| ||| | | | || |||||||| || ||||| || Sbjct 1152 TCCTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCCGTCCTCCAGCTGCTTCCCGGCGAAG 1211 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| |||| | ||||||||||| |||||| || || || Sbjct 1212 ATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGACTTCAC--AT 1269 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| | ||| || |||| || || || || ||||| || ||||| | Sbjct 1270 TCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGATTGTCTTGCCCGTCAGGGTCTTAA 1329 Query 34969 CAAAGATCTGCATATT 34984 | ||||||||||| || Sbjct 1330 CGAAGATCTGCATCTT 1345 >seq29849 Length=3363 Score = 84.2 bits (92), Expect = 1e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| | |||| | || | || || || || ||||| || || Sbjct 1082 TCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAAG 1141 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| |||||||| |||| | || |||||||| |||||| || ||| Sbjct 1142 ATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTC 1201 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| || |||| || || || || || || || ||||||||| Sbjct 1202 TCAATCGTGTCGTTGGACTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCACA 1261 Query 34971 AAGATCTGCATATT 34984 || || ||||| || Sbjct 1262 AAAATTTGCATTTT 1275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324477663569064