Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_016160.1 Length=36661 Score E Sequences producing significant alignments: (Bits) Value seq8567 152 1e-32 seq8566 80.6 6e-11 >seq8567 Length=29384 Score = 152 bits (168), Expect = 1e-32 Identities = 335/493 (68%), Gaps = 12/493 (2%) Strand=Plus/Minus Query 12695 GGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGAAAATAACGAACT 12754 |||| ||||||| ||| ||| || ||||||| | ||||||||||| | |||||||| Sbjct 1793 GGATCAATGCAAAGGCTGTCTGTCGTCCTGCAAGTTGCGATTCGGCGAGAGCAACGAACT 1734 Query 12755 CTCGTTTGGTGGCTTCCCTGGTACGTCGCTGAT---CAGGAGTTGA-TATGCGTCAGAAA 12810 || || || || ||||| | ||| || || |||||| ||| ||||| || | Sbjct 1733 TTCCTTCGGCGGATTCCCCGCCGTGTCCCTCATTGCCAGGAGCTGACCATGCGCAAGCAC 1674 Query 12811 ACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGTGTTGCGGCGTG 12870 | || | ||||| ||||||||| ||||| || ||||| ||||| ||||| || Sbjct 1673 ATAATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAGTGCTGCGGGCTG 1614 Query 12871 GTG-GCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCTCGCTACCGAGCC 12929 || || || | |||| |||| || || ||||| | ||| |||| || ||||| Sbjct 1613 CTGCTGGCTGTAG-GGCGGGCGCAGAAGTACTTCCCATGCCGGAACATCGCCACGGAGCC 1555 Query 12930 GACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGACTGGGGTACGGT 12989 || ||| | |||| || || || ||||| || || || |||||| ||| ||| Sbjct 1554 GAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGACCTGGGCGAGGT 1495 Query 12990 GATCGCCATCGTTCACAGTCACCCTGACGCCACAACGCAGCCG--AGCGAACTGGATAAA 13047 ||||| ||| || ||| ||||| |||||||| | | |||| | || || || Sbjct 1494 GATCGGCATTGTCCACTCGCACCCGGACGCCACCAGCCGGCCGTCACCGCAC--GACTTG 1437 Query 13048 GCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCGGATGGGGATTTA 13107 || || || | ||| || |||||||| ||| || ||||| || |||||||| Sbjct 1436 GCCATGTGTGAGGTCACGGCCTTGCCCTGGCACATTCTGTCGTGGCCCGAGGGGGATTTG 1377 Query 13108 CGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTTTGTGCTTGGACA 13166 || || ||| ||| || | | || ||||||||| |||| |||||||| | ||| Sbjct 1376 CGGACGATCACGCCAACGGGCCGCAC-GCCACTGCTCAAGCGCCCGTTTGTACATGGCGC 1318 Query 13167 CTTCGACTGCTGG 13179 || ||||| ||| Sbjct 1317 CTGGGACTGTTGG 1305 >seq8566 Length=6269 Score = 80.6 bits (88), Expect = 6e-11 Identities = 284/444 (64%), Gaps = 0/444 (0%) Strand=Plus/Minus Query 15789 CGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGCG 15848 || || ||| ||||| |||||| || | |||||||| |||||| | |||| ||||| Sbjct 3120 CGCTATGGCGACAATCCGCTGGAGATCAGTGCCATCGGTTGCACCCGCGAGTCGGAGGCT 3061 Query 15849 AACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGAT 15908 | || || |||| | || || || |||||| | | ||| | || | Sbjct 3060 CAGCGCCGCGGCAAGTGGGCGCTGCTGACAAACTCCAAGGACAGGGCTGTCACATTCAAG 3001 Query 15909 GTCGGGCTGGACGGAAACATTCCGCAGCCTGGCTACATCATCGCCGTGGCAGACGAGCTG 15968 ||||| || || || ||| |||| ||||| ||| | ||| | | || ||||||||| Sbjct 3000 GTCGGCCTTGATGGGCGCATCCCGCTCCCTGGATACGTGATCCCAATCGCGGACGAGCTG 2941 Query 15969 CTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACTT 16028 || | || | ||||||| |||||| || || ||||| || |||| || Sbjct 2940 CTGGCGGGCCGGCCGGTGGGCGGGCGCATCTCTGCGGTGAACGGCAAAGTCATCACCCTG 2881 Query 16029 GACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTTCCCTCCGGAGCG 16088 ||||||| | | || || ||||| ||||| || |||||||| || |||| | Sbjct 2880 GACCGCGATACCCAGGCGAAGCCCGGTGACCGCCTGATCCTCAACCTGCCTGACGGAAAG 2821 Query 16089 TCGCAGAGCAGGACCATTCAGGCCGTGAACGGGGAATCAGTCACAGTCACCACGGCATAC 16148 | || || | ||| | || || | ||| ||||| ||||||||||| ||| Sbjct 2820 TGCGAGGGCCGCACCGTGCAACTGGTCAGCGGCCGCCAGGTCACGGTCACCACGGCGTAC 2761 Query 16149 AGTGAGACGCCACAGGCCGAAGCTGTTTGGGTGGTTGAATCTGACGAGCTCTACGCGCAG 16208 | | |||| || ||| || |||| | | || ||||||| || | | | Sbjct 2760 TCCGTGGCGCCTGAGCGTGAACTGGTGTGGGCGCTCGACGCTGACGACCTGGCCATCCCG 2701 Query 16209 CAGTATCGAGTTGTCAGCGTTTCC 16232 | |||||| || |||||||||| Sbjct 2700 CTGTATCGGGTGACCAGCGTTTCC 2677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117138749952638