Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq32405 174 5e-39 seq8869 84.2 7e-12 >seq32405 Length=7639 Score = 174 bits (192), Expect = 5e-39 Identities = 202/271 (75%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | ||||||||||||||||| || || |||||||| |||||||| || || Sbjct 2973 CCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGCCC 2914 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 ||| | || ||| |||| || ||||| |||||||||||||| || || ||||||||||| Sbjct 2913 GATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTT 2854 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 ||| ||||| |||||||| || |||||||| ||| || | ||| | ||||| | || Sbjct 2853 CGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATCAT 2794 Query 21493 CATCGCGAAGCACCGCAACGGCGAGCCAA---GCACTGTTCGGTGCGCGTTCCTGGGTAA 21549 |||| || || || ||||| ||||| |||| || || ||| | ||||| Sbjct 2793 TATCGGTAAACAGCGTAACGG---GCCAATCGGCACCACGCGCCTGGCCTTCATCGGTAA 2737 Query 21550 GTACTCGCGATTCGAGCAGCTCGCTCCGGGC 21580 ||| | || |||||| | || || |||||| Sbjct 2736 ATACACCCGCTTCGAGAACCTGGCGCCGGGC 2706 >seq8869 Length=13117 Score = 84.2 bits (92), Expect = 7e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 12963 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 13021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157036867717682