Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq8567 205 3e-48 seq12394 178 4e-40 seq21847 109 2e-19 seq8869 84.2 8e-12 seq32405 80.6 9e-11 >seq8567 Length=29384 Score = 205 bits (226), Expect = 3e-48 Identities = 289/405 (71%), Gaps = 1/405 (0%) Strand=Plus/Minus Query 42507 GATTTTCCCTGCTCAAGGTTGGAAATTGAGGTCTGATCCAGGCCGACTCTCTGAGCTAGT 42566 |||||||| ||||||||| ||||| || ||||| | ||| || | || | | Sbjct 25309 GATTTTCCACGCTCAAGGTCAGAAATCGACGTCTGCGTGATACCGGCTTTAGCGGCCAAT 25250 Query 42567 TGAGCCTGGGTTAGTTTGGCGTGCTTACGCGCGGCCTTGATGCGATCTTTGAGTTCCATC 42626 | |||| | || ||||||||| ||||| ||||| | |||||||||| ||||||| Sbjct 25249 TCGCCCTGATTGAGCTTGGCGTGCCGGCGCGCTGCCTTTAAACGATCTTTGAATTCCATC 25190 Query 42627 CGAAAATTATCATGGGCACTCCCATGTCCTTGCAAATGAGTATTCCC-TGCGTTACCGTA 42685 || | ||| | ||| ||||||| ||||||||||| |||||||| | ||| || Sbjct 25189 CGGCGAGTATTACGGGTGCTCCCATATCCTTGCAAATCGGTATTCCCATAACTTAATATA 25130 Query 42686 TGAGTATTCCCATAAGGAGGGATGCTATGACCACCATCTACAAAGAGCTCGTCGCCCATT 42745 || |||||||| || |||||| |||| ||| || || || || ||||| ||| | Sbjct 25129 TGGGTATTCCCGTATGGAGGGGCAGCATGAACACTATTTATAAGGACCTCGTTGCCTTCT 25070 Query 42746 TCGGGACTCAAGACGAGACCGCCGCGAAGCTCGGCGTTGACCAAAGCACTGTGTCTGGAT 42805 |||| ||||| || | || |||| |||||| ||||| |||||||| || || || | Sbjct 25069 TCGGCACTCAGGAGGTCACGGCCGAAAAGCTCAAGGTTGATCAAAGCACCGTTTCCGGTT 25010 Query 42806 GGGTCCGGGGAAAGCACGGGATGTCTCCTGTTGTTGCGAAGCGGGCTCAGGTTCTGACCG 42865 |||| || | |||||||| |||||||| || ||||| ||||| || ||| |||||| Sbjct 25009 GGGTTCGCGAGAAGCACGGCATGTCTCCAGTGGTTGCCAAGCGAGCGGAGGCGTTGACCG 24950 Query 42866 ACGGGAAATTCAAGAAAGAGGACCTGTGTCCGGCTTTCCCGTGGG 42910 || ||||| ||||| ||| |||||| | || || |||| Sbjct 24949 GAGGTGCTTTCAAAAAAGAATCCCTTTGTCCGTCGTTTCCCTGGG 24905 >seq12394 Length=1694 Score = 178 bits (196), Expect = 4e-40 Identities = 596/915 (65%), Gaps = 51/915 (6%) Strand=Plus/Plus Query 35439 CGAACTCTCCCCCGATTGCTTGCATGGTGTCCCGGACAGCCACAGCCATGCCTTCATCAG 35498 ||||||| ||| ||| | | ||||| || | | | |||| | || || || || Sbjct 659 CGAACTCGCCCTGGATCTCCTCCATGGCGTACTGCAGAGCCTCCTTCAACCCCTCGTCGT 718 Query 35499 CCGTTTCTGCCAGGGCTGCAAGTTCGAGAAACTGCTCGGTTAGCTTGTAGAGTTGGGTCA 35558 | || || |||| ||| ||||||| | || |||| || ||||||| ||||||| Sbjct 719 CGGTGTCAGCCATTGCTTGAAGTTCGGCCAGCTTGCCGGTGAGTGTGTAGAGCTGGGTCA 778 Query 35559 TGCCGCCTTCTCCT---CGGTGAATCGCTTGATCTGCTCGGAGAATTC--GCGAGCAATG 35613 ||| || ||||| ||| |||| | ||| ||| | ||| ||||| || Sbjct 779 TGCTGCAGCCTCCTTATCGGC--ATCGGT-GATTCGCTTCCA---TTCCAGCGAG--ATA 830 Query 35614 CGCTTGACGCCACTATCGTCTTTGCGCGCAGTGAGCTTGCGCACGGCAACGTCGTGGATC 35673 |||| | |||| | ||| |||||| |||||| ||||| || |||||||| |||||| Sbjct 831 CGCTCGGCGCCCTTGGTGTCCTTGCGCAGAGTGAGTTTGCGTACCGCAACGTCATGGATC 890 Query 35674 TTCTTGAGCTCGTACTGGGACTGGGCGCCTTGCATCGTCTCGATAATCGATTTGATGTAG 35733 || || ||||| | |||||||||| || |||||| ||||||| ||||||||||||| Sbjct 891 TTTTTCAGCTCTTGGGGGGACTGGGCTCCGGCCATCGTGTCGATAACCGATTTGATGTAG 950 Query 35734 GCGAGGCGCTCTTCCTTC-GCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCGAT 35792 | |||||||| | || | | | | | || Sbjct 951 TCCAGGCGCTCCTGCTGCTGGCGAGCCCTCTCGGCCTCCTGGTCTTCGGCGTGT-TCAAT 1009 Query 35793 CTGCTCCTCTTCACGACGTGCTTCCACATAGTCGCGGTCGTCGAACAAGCCAAGGAAGAT 35852 | |||| || || || | || || || |||||| |||| || ||||| | Sbjct 1010 CAGCTCTTCGTCCTTCAGTTGATTGACGTACTCCGCGTCGTCAAACATCCCCAGGAACAC 1069 Query 35853 GTCCGCACTGAACCCGAGCATCGCAAGAGATTTTTTCACGGCGTCCGTGAGTGATTTTTT 35912 ||| || ||||| |||||||| | || ||||| || | ||| || || || || || || Sbjct 1070 GTCGGCGCTGAAGCCGAGCATAGATAGCGATTTCTTGATGGCATCGGTCAGCGA-TTCTT 1128 Query 35913 CGGCGCCTCGGTGTCGGTGGTGATTCCCCACTTGGACCGGTAGGAGAACGGCGTGCAACC 35972 |||||||||| ||||| || | || |||| || |||| | | | ||||| || Sbjct 1129 CGGCGCCTCGCCATCGGTTGTCGTACCGAACTTCGATTTGTAGAGGTAGCGAGTGCAGCC 1188 Query 35973 GTATTGCTCTACCTCTCCGCGCTTGCCGTCCAATTCGAACCACAGTTTGATGCGCACGGT 36032 ||| ||||| | ||| |||||||||||||||| |||||||| | || | ||| Sbjct 1189 GTACTGCTCGATCTCGCCGCGCTTGCCGTCCAGCTCGAACCAGAAGCGAATCTTGATGGT 1248 Query 36033 GTGCCCGACTTCGTGACCAATTAGTTCGCTGACCTTCTTGCCTTCAGCATCGTTG--ATT 36090 ||| || || |||| ||| || | || | |||||| || | | | ||| Sbjct 1249 GTGGTTGAGCTCTCGACC---CAGTACGAGGCGTTTGTCGCCTTC-GCCGC-TAGCCATT 1303 Query 36091 TCACGGAAGATCGGGCCGCCCTGGTCAAAGCGCTCCTCGATGACCGTCCAGCCCCACCCG 36150 | | || ||| ||| ||||||||||| ||||| | ||| || ||||| Sbjct 1304 T--CTGA----------GCCTGCGTCGAAGCGCTCCTCCATGACTGACCACCCAAACCCG 1351 Query 36151 ATCCCGACAGGGCCGAACATCTGGGTAGCCTTCATGATCATGTGCTGGCCGCTGATCGAC 36210 || |||||||| ||||| |||| || || ||||||||||| | |||| | | Sbjct 1352 ATGCCGACAGGCCCGAATATCTCCGTGGCTTTCATGATCATCGCCGTGCCGTTCAGGCTG 1411 Query 36211 GTGATCTGCTGACCATCGACTTTTGC-GCTCTTGGTG--GCCGATG--GGTCAGTTGCTT 36265 ||||||| ||| || | || | || ||| |||||| || | || |||| |||| Sbjct 1412 GTGATCTTCTGTCCGCCAACCTCGGCAGCT-TTGGTGTAGCGGGTGTCGGTC--GTGCT- 1467 Query 36266 GAACCTGATCCCATAGCCGCATGTTTTGGGTATGCATGAGTGATCCTCGCCGCGCATG-- 36323 |||| ||||| | | |||||||| || |||| | ||||| |||||| ||| Sbjct 1468 -GACCTTTTCCCAGATCTGCATGTTT---GTCGACATGGGGAATCCTTGCCGCG-ATGCT 1522 Query 36324 CGCAGCCAGTGAAGG 36338 |||||| | |||||| Sbjct 1523 CGCAGCGATTGAAGG 1537 >seq21847 Length=54027 Score = 109 bits (120), Expect = 2e-19 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 38381 GCTGATGTCCTGCAGGCGCTCGACGCGAACAGCGGTGATCTCCAGCAGGATGCGGGAGGC 38440 |||||| |||||||| ||||||||||| ||| ||||||||||||||||||||||| | || Sbjct 1264 GCTGATATCCTGCAGCCGCTCGACGCGGACATCGGTGATCTCCAGCAGGATGCGGCATGC 1205 Query 38441 CCAGCGGGGCATGTGGATACTTGGCTTCCA 38470 |||||| ||||| ||||| |||||||| Sbjct 1204 CCAGCGCGGCATATGGATCGACGGCTTCCA 1175 >seq8869 Length=13117 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 27080 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27138 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 12963 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 13021 >seq32405 Length=7639 Score = 80.6 bits (88), Expect = 9e-11 Identities = 146/214 (68%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 45524 TGTCCTGTGCTTCCCCTCTGCCAGCTCAACCGAGGTTGCGAGTCTCGCCCCGACAAGCGT 45583 || || ||| || |||| | |||||||||||| | ||| || || |||| || Sbjct 2975 TGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGC 2916 Query 45584 CCGGTCCTCAGCGACCTGCGCGAGTCCGGCGCCATTGAGCAAGACGCCGACATCGTCATG 45643 ||| || | |||| |||| || ||||| || || ||||| || || ||| | ||||| Sbjct 2915 CCGATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATG 2856 Query 45644 TTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGACAGGAAGGGTATCGGCGAAATC 45703 ||||| ||||| || || || ||| |||| | | ||| || || |||| |||||| Sbjct 2855 TTCGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATC 2796 Query 45704 CTGATCCGGAAGAACCGGGACGGAGAGATCGGCA 45737 | ||| | || | || |||| ||||||| Sbjct 2795 ATTATCGGTAAACAGCGTAACGGGCCAATCGGCA 2762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172674345491716