Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_018274.1 Length=36847 Score E Sequences producing significant alignments: (Bits) Value seq8416 242 9e-60 >seq8416 Length=35894 Score = 242 bits (268), Expect = 9e-60 Identities = 277/372 (74%), Gaps = 0/372 (0%) Strand=Plus/Plus Query 1364 GTAAAGACGAAGCGAGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACAT 1423 |||||| | | ||| || |||||||| || ||||| ||| | || | ||||| Sbjct 1429 GTAAAGCGGCAAGGAGTGCCTGAACATGCGTAACCAAAAAGATGACAGAACATTAGACAT 1488 Query 1424 CTTCGATGTTCCGCAGCCGGCCCGCGCTATACCTGGTGAGTGCAACTACGCCGCCCAAAT 1483 |||| |||||||||||||| | ||||||| ||| | ||||||| |||||||| | Sbjct 1489 CTTCTCTGTTCCGCAGCCGGTGCTTTCTATACCCGGTCACGGCAACTATGCCGCCCAGGT 1548 Query 1484 CAGCGAACTGGTCAGCGAAATTCTGAAGGCTTGCGACCTTGACCGTTACGAGGTCGCCGC 1543 |||||| |||||||||||| | || || | | |||| | ||||| || ||| | || || Sbjct 1549 CAGCGAGCTGGTCAGCGAAGTCCTCAAAGAGTCCGACTTGGACCGCTATGAGATTGCGGC 1608 Query 1544 CCGCATGTCGCGCCTGTCCGGCGATGACGTGAGTAAGAACATGCTCGACGCCTGGTCGAG 1603 |||||||| ||||| || ||||| ||||| || ||||||||| | ||||||||||| || Sbjct 1609 TCGCATGTCACGCCTTTCGGGCGACGACGTTAGCAAGAACATGTTAGACGCCTGGTCAAG 1668 Query 1604 CCCCGCCCGAACCGATCACAACCTGCCTTTCTACCGCGCCGCCCTCCTGGAGGACGTCTG 1663 || ||||| | ||||||||||| ||| | || || || || | |||||||| ||||| Sbjct 1669 TCCTGCCCGTGCAGATCACAACCTACCTCTGTATCGAGCTGCTTTGCTGGAGGAAGTCTG 1728 Query 1664 CGCGAGCCATCTGCTGACCAACTGGCTGGTCGGTGTGCGTGGCGGCCGCGTGGCTTACGG 1723 || |||||| | ||||| || |||| || |||| || ||||| || ||||| || Sbjct 1729 TGCAAGCCATGTCCTGACGAATTGGCAAGTACACCTGCGCGGTGGCCGGGTCGCTTATGG 1788 Query 1724 CCGCGATGCACT 1735 ||||| || || Sbjct 1789 GCGCGAGGCTCT 1800 Score = 149 bits (164), Expect = 1e-31 Identities = 123/147 (84%), Gaps = 5/147 (3%) Strand=Plus/Plus Query 9356 AGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTACTGATG 9415 ||||||||||||||||| || | |||||||||||||||||||||| |||||||||||||| Sbjct 8689 AGCGAAACCGCCCCGGCGTG-CTGGGACGGTCTGCCGGACGTGGTTGTCCGGTACTGATG 8747 Query 9416 AGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGCCGCCTGGCGCGGGA 9473 |||||||||||||||| ||||| ||| | |||| ||||| ||||||||| || || Sbjct 8748 AGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCCAAACCCGCCTGGCACGCGA 8805 Query 9474 ACGCCAACGGGCGAAGCGCGAGCGCGA 9500 ||| |||| || |||| ||||||| Sbjct 8806 ACGTAAACGTGCCCAGCGTAAGCGCGA 8832 Score = 134 bits (148), Expect = 3e-27 Identities = 321/475 (68%), Gaps = 33/475 (7%) Strand=Plus/Plus Query 3262 GCATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGCGACTTCACCAAGC---TGCTCCC 3318 ||| ||| |||| || |||| || |||| |||||| | ||||||| || ||| Sbjct 2615 GCAGGAACTCAAAGCCCTGCAACCATTCAAGCGCCGC---TCCACCAAGAGCATGTACCC 2671 Query 3319 GACCGACGTCTATTCATG--CGACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATG 3376 | |||||| ||||| ||||||||||| ||| || || ||||| | |||| | | Sbjct 2672 GTGCGACGT--ATTCACCGCCGACGGCCACAAGTTTGATGCAGAGGTATTGAACCC-ACG 2728 Query 3377 CAC-GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAAT 3435 ||| ||| ||| | ||| |||||| |||||| || |||| || ||| || || Sbjct 2729 CACCGGCAAGCCTTACCGCCCGGAAGCAACCACCGTCCTCGATGTCGCTACTCGC--AAG 2786 Query 3436 TCCG--GGATGGTCCACCGGCTTGGCCGAGTCGGCCCTGGTGGTGGTCGATGCCCTGCGT 3493 ||| || |||| || ||||||||| || | | || | || ||||||||| Sbjct 2787 GCCGTGGGTATTTCCATTGGTGAGGCCGAGTCCACCATCGGCGTTATGGACGCCCTGCGT 2846 Query 3494 GACGCC-TGCACCAAGGGCGGCATTCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTA 3552 |||||| |||| || |||||| || | |||||||| |||||||| || |||| Sbjct 2847 GACGCCATGCAGCA----CGGCATGTTTGCGGTGTTCTACGTTGACAACGGTTCCGGCTT 2902 Query 3553 CATCAACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGATAT 3612 |||| ||| | || || | | ||| || | | ||| |||| ||| Sbjct 2903 TGCCAACGACACCGTACGTGAAGTAG---TCGACCGTCTCGGC------GGCAC---TAT 2950 Query 3613 GAAGAACAGCCTGCCCTACAACAGCCAGGCGCGGGGCGTGATTGAGCGCGTCCACCAGAG 3672 || | | ||||||||||||||||||| || ||| | |||||||| |||||| | Sbjct 2951 GACCCATGCCTTGCCCTACAACAGCCAGGCCCGCGGCCTCATTGAGCGTTCCCACCAAAC 3010 Query 3673 CCTGTGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGAC 3727 | ||| | || |||||| | ||| || ||||||||||||||||||||||| Sbjct 3011 GATTTGGGTCAATGCAGCCAAGAAGCTGACCAGCTACATCGGCGCCGACATGGAC 3065 Score = 113 bits (124), Expect = 1e-20 Identities = 222/322 (69%), Gaps = 11/322 (3%) Strand=Plus/Plus Query 9747 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTG 9806 || ||||||||||||||| | || || |||| ||||| ||||| ||||| ||| || Sbjct 9061 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGATGAAACCTACCGCGCCTTGTTG 9120 Query 9807 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACCTAGGGCCGCGCCAGATCGACCACGTA 9866 | ||||| || | ||||| |||||||| || || ||| |||||||||| | ||| Sbjct 9121 GGCCGCGTGGCAGATGTGCGTTCGGCCAAAGATCTGACGCCACGCCAGATCGGCGCGGTA 9180 Query 9867 CTGGTCGAACTCCAGCGCCTGGGCTGGAAAC---CGAAGAGCAACCGGCAGGGCCGGGCG 9923 |||| ||| || |||||||||||| | | | ||| || ||| || | || Sbjct 9181 CTGGCCGAGTTCGCTCGCCTGGGCTGGGAGCCTACAAAGGCTAAAAAGCAAGG--GCGCA 9238 Query 9924 ACGCCAAAAGTGCCG---CAAAACCG-GCAAACCGTGCTGCGCAAAATCACCGCGCTCCT 9979 | | || |||| || | | |||| | ||| | || || | ||||| || | || Sbjct 9239 AAG-CACCAGTGGCGGCTCCAGACCGTGTAAAAC-TGGTGGGGAAAATAGAGGCCTTTCT 9296 Query 9980 GGCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGT 10039 || || | || ||||| ||| |||||| ||||||| |||||||||| |||| Sbjct 9297 CTCCGAGGCAAAGCGTTCCTGGGCCTATGCCGACGGTATGGCCCTGCGCATGTTCAAGGT 9356 Query 10040 CGAGCGGGTCGAGTGGCTGGAC 10061 ||| || ||||| ||||| ||| Sbjct 9357 CGAACGCGTCGAATGGCTAGAC 9378 Score = 87.8 bits (96), Expect = 4e-13 Identities = 209/310 (67%), Gaps = 12/310 (4%) Strand=Plus/Plus Query 177 ATCCAGCGGCTAGCCCATACAACCCTTCCGATGATTTCCAGGTCCGACAGCTTTGCCTTT 236 ||||| | || ||||| ||||| | ||| | || || ||||| ||| ||| | || Sbjct 255 ATCCAACCGCCCGCCCAAACAACACGTCCCACAATCTCTAGGTCATTCAGGTTTTCTTTA 314 Query 237 GGGACGATCATT-TCGGTATAGGCCTTGTTTTCACTGATGATCGACACCGACCCGTCGAA 295 | || |||| || | ||| ||| |||| | ||||| | | || ||| | | Sbjct 315 GAAACCTTCATGGTCTG-ATAAGCCGCGTTTGCGCTGATAACTGCTACGCCACCGCCAAT 373 Query 296 GCGTCTTTGCAGGCGCTTTGCATAGAGATGGTCATCCAGGCGAACGACGTAGA---CTGC 352 | | |||||| ||||| || || ||||||||||||| ||||| ||||||| || | Sbjct 374 CTGGCGTTGCAGCCGCTTGGCGTACAGATGGTCATCCAAGCGAATAACGTAGATGGCTTC 433 Query 353 CGCGTCTTGGACCGTTG--ACTTGGTGTGATCCACAAGCACTGTATCTCCATCGCACAGC 410 | | || || | |||| ||| ||| || | | ||| || || ||||| | |||| Sbjct 434 CCCTTCCAGG-CTGTTGCGACT----GTGGTCGATCAACACAGTGTCGCCATCACTCAGC 488 Query 411 AGAGGCTCCATAGAGTCACCGCCAATGCGGATCGCTGAGATACTGGAGGGGTCCAAACCC 470 | |||||||||||||||| | | ||||| || |||| | || || ||||| ||| Sbjct 489 ACCCCCTCCATAGAGTCACCGTCCACCCGGATAGCCGAGAGCTTCGACGGCTCCAATCCC 548 Query 471 TTTTTTCGCA 480 | || |||| Sbjct 549 TGCTTGCGCA 558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117733671381554