Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq8567 217 5e-52 >seq8567 Length=29384 Score = 217 bits (240), Expect = 5e-52 Identities = 333/472 (71%), Gaps = 7/472 (1%) Strand=Plus/Minus Query 48562 CCAAATCCTCAGCGATACCGGCAGCATCCATAACCCTGACCACGAACACCTGTTAGAGGC 48621 ||| ||||| ||| ||||||||||| || ||| ||||| | ||||| | || || Sbjct 17292 CCAGATCCTTGCCGACACCGGCAGCATTCACAACGAAGACCATGCCCACCTACTGGATGC 17233 Query 48622 TGACCTCTGCTTCATGTGGGCGTC--CGATTCGTTCGCTAAGAAAGGGCGGTATGTCCTC 48679 ||| || | ||||||||||||| ||| |||| || | || ||| ||||| Sbjct 17232 AGACATCCGGGTCATGTGGGCGTCGTCGAGC--TTCGAGAAACAGGGTCGGACCGTCCTG 17175 Query 48680 GGCCAAGCCGAGCAGGTAATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGAACAG 48739 ||||| |||||||||||| | | ||||| || |||||||||||||| | |||||||| Sbjct 17174 GGCCAGGCCGAGCAGGTAGCGTTTCGCGCGGGCGGTTGGCAGAAAGCTCGGATGGAACAA 17115 Query 48740 CAGATGTATGAATGGTTCGGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTAC 48799 |||||| ||| |||||||| | ||| ||||||||||| |||| ||||| ||| Sbjct 17114 CAGATGCGTGATTGGTTCGGCGATGTGCCGGCTTTCATCATCACCTTGGCTGCCGACTAC 17055 Query 48800 TGCTCACAATGCAATGACCTCGAGTTCTGCGCACTGGTAGAGCATGAGCTTTACCACATC 48859 ||| | || |||| ||||| ||||||||||| ||| | ||||| ||||| || ||| | Sbjct 17054 TGCGCGCAGTGCAGCGACCTAGAGTTCTGCGCTCTGATCGAGCACGAGCTGTATCACCTG 16995 Query 48860 GCACAGGCCACCGATGATTTCGGAGCGCCTAAGTTCAACAAAGAGACCGGGCATCCATTG 48919 || || || ||||| | | ||| || |||| | |||| ||| || | Sbjct 16994 GCTCACGCGACCGACAAATACGGTCAACCAGCATTCACCCAAGA---CGGCTCGCCGAAG 16938 Query 48920 CTTACACTGCGCGGCCACGACGTCGAAGAATTCATTGGTGTCGTACGTCGATACGGTGCC 48979 | | |||| ||||||||||| ||||| ||| | ||||| || || || |||||||| Sbjct 16937 ATCAAGCTGCAGGGCCACGACGTAGAAGAGTTCGTCGGTGTTGTCCGCCGCTACGGTGCG 16878 Query 48980 AGCAAAGAAGTACAGGAGCTTGTTGATGCGGCCAAAGCGCCAGCAGAAGTGG 49031 ||| || || || | | | || ||||| || ||| || || || |||| Sbjct 16877 AGCCCTGACGTTCAAGCGTTGGTAGATGCTGCAAAAAGTCCTGCTGAGGTGG 16826 Score = 145 bits (160), Expect = 2e-30 Identities = 251/356 (71%), Gaps = 8/356 (2%) Strand=Plus/Minus Query 19 GAGGTCAAAGCCTTCATCGTTCAGTCTCTTGCCTGTTTCGATACTCCATCCCAGGTGGTT 78 |||||||||||||||||||||||| |||| ||||| |||||||| |||||||||||||| Sbjct 16722 GAGGTCAAAGCCTTCATCGTTCAGGCTCTGGCCTGCTTCGATACGCCATCCCAGGTGGTA 16663 Query 79 G-AGCTGGTCAAAAAAGAATTTGGCCT-GAGCATCACACGTCAGCAGGTCGAATCCCACG 136 | ||| |||||| | |||||| || | ||| ||||| || ||||| ||| | |||| Sbjct 16662 GCAGC-GGTCAAGACAGAATTCGGGATTGAG-ATCACCCGCCAGCAATGTGAAACGCACG 16605 Query 137 ACCCGACGAAAGCAAAC--GGCAGGGGCCTGGCGCAGAAATGGGTGGACATGTTCAATGC 194 ||||||| |||| | ||||| || ||| ||| ||||||||| ||||| | || Sbjct 16604 ACCCGAC-AAAGTTTGCCGGGCAGAAGCTCGGC-AAGACCTGGGTGGACCTGTTCCACGC 16547 Query 195 CACCCGTAAACGATTCCAGAATGAGATCGCCGACATACCGATCGCGAACAAAGCGTACCG 254 | || || ||||||| | |||| |||| || || || || || |||||||| Sbjct 16546 TGCTCGCAAGCGATTCCGTGAAGAGACAACCGATATCCCCATTGCCAATCGTGCGTACCG 16487 Query 255 GTTACGCGTTCTCGACCGAATGGCGACCAATGCTGAAAAGATGAAGAACTACGGCATGAC 314 | |||| || | || |||| || || || || ||| ||| | |||| Sbjct 16486 ACTTCGCGGCCTTGGGCGGCTGGCCGAGAAGGCCGAGAACATGCGCAACCTGGCGCTGAC 16427 Query 315 CTCGCAACTTATCGAGCAGGCCGCCAAAGAAATGGGCGATGCCTACACTAATCGCC 370 | || ||| |||||| || |||||||| | ||| || | ||| ||||||| Sbjct 16426 TGCCCAGCTTTACGAGCAAGCAGCCAAAGAGACGGGTGACGTCTATGTCAATCGCC 16371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156976096173868