Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq8567 129 1e-25 seq8566 109 1e-19 >seq8567 Length=29384 Score = 129 bits (142), Expect = 1e-25 Identities = 611/931 (66%), Gaps = 40/931 (4%) Strand=Plus/Minus Query 30846 CTGGCGGCCAAATCAATCTGGTGGCAGGGCGAAGAATATTCCGCCTGGCC-GTGCCAGAT 30904 ||| ||||||| || || ||||||||||||| ||||| | || ||||| |||| |||| Sbjct 2278 CTGCCGGCCAAGTCGATTTGGTGGCAGGGCGCCGAATACGCGGCATGGCCAGTGC-AGAT 2220 Query 30905 AGACGGCATCGAGGCATCAACTG--ACGGCAGCAGCGCCCAA-CCGAAGTTAACCGTTGC 30961 || ||||| | || |||| | |||||| | || ||| |||| ||| ||| | Sbjct 2219 CGAGGGCATTG--GCTCCAACAGCGACGGCA-CGGCCACCAGGCCGACGTTCGCCGCCGG 2163 Query 30962 GAACCTGGATAC-CTCGATCACTGCGCTTTGCCTCGCGTATGACGACCTGTTCAGAGCGA 31020 ||| | || | || |||||||| | ||||| || | || ||| |||| | | Sbjct 2162 CAACATCAATGGGCGCG-TCACTGCGTTGTGCCTGGCCTTCGAGGACATGTTGAAGTTCA 2104 Query 31021 AGGTGACGATCCGTGACACGCTGGCGCAGTACCTCGATGCGCGCAACTTCCCCGACGGGA 31080 || |||| | || || || |||| |||||||| || ||| |||||||||||| || | Sbjct 2103 AGCTGACTGTTCGCGAGACCTTGGCCCAGTACCTGGACGCGGCCAACTTCCCCGATGGCA 2044 Query 31081 ACCCCACGGCAGACCCGACGCAGG-AGATCCGGCGCGTTTATTACATCAACGGCAAATCC 31139 | || || || |||||||| |||| || | || | | | |||||| || ||| || Sbjct 2043 ATCCAACTGCTGACCCGACTCAGGAAGGGCTGGAG-ATCTGGTACATCGACCAGAAAACC 1985 Query 31140 AGCGA-AACGAACGAGGCCGTGGAATTTGTCCTGTCCAGCCCGATGGATCTGGA-AGGGT 31197 || || ||| |||||| |||| | | ||||| |||| || | || | Sbjct 1984 AGTGAGGACG-GCGAGGCAGTGGTCTGGGAGCTGTCGTCCCCGGGCGAGATCGATAACCA 1926 Query 31198 TACAGTTGCCACGTCGTCAATTGCACTCCCTT-TGCACCTGGTGCATTAACGGCAA---G 31253 | | ||||| | || || || || | || ||| |||| || | || ||| Sbjct 1925 TGGA-TTGCCCGGGCGCCAGATG-ACGACTTTCTGCCACTGG-GCTATGAC--CAATGGT 1871 Query 31254 TACCGCAGCGGCGATGGTTGCTCCTACGCCGGAACACGCTAT-TTCGACCGGCTGAATAA 31312 |||||| | | | | ||| |||| |||| | || || |||||| | | || Sbjct 1870 TACCGC-GGGCCCA--ACTGCGGCTACACCGGTGC-GGCCATGTTCGACGACGAGGACAA 1815 Query 31313 CCCCGTTGACGATCCGGCGCTGGACGTCTGCAACGGTACGCTGACGGCCTGCAAGCTGCG 31372 |||| || || ||||| ||| ||||| || ||| || |||||||| |||| Sbjct 1814 CCCCACGGATGACCCGGCCAGGGATCAATGCAAAGGCTGTCTGTCGTCCTGCAAGTTGCG 1755 Query 31373 ATTTGGCGAGGCGCAGC-CGCTCGACTTCGGCGGATTCCCCGGCACCAGTCTGAT---CA 31428 ||| ||||| | ||| | || ||||||||||||||||| | || || || Sbjct 1754 ATTCGGCGA-GAGCAACGAACTTTCCTTCGGCGGATTCCCCGCCGTGTCCCTCATTGCCA 1696 Query 31429 GGAGCTAAACATGGACGAAACAC-TGATTCAGGAGATTAAGCGGCACGCGGC-GCAAACC 31486 |||||| | |||| | || ||| | ||| || ||| || ||| ||||| || | Sbjct 1695 GGAGCTGACCATGCGC-AAGCACATAATTGCGGCGATCCAGGCGCATGCGGCAGCGGA-G 1638 Query 31487 TACCCGCAGGAGTGCTGCGGGCTTGT-CATTCTGCAGGACGGCCAGCCGCGTTATCTCCC 31545 || ||| | |||||||||||||| | | ||| ||| ||| | || | || |||| Sbjct 1637 TATCCGAAAGAGTGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGC-GCAGAAGTACTTCCC 1579 Query 31546 CTGCAGAAACACCGCAGACAACCCGGCGGCGCATTTTCGCATCGCGCCGGAGGATTACGC 31605 ||| | |||| ||| | ||| | | ||||| | | || ||||| ||||| Sbjct 1578 ATGCCGGAACATCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGC 1519 Query 31606 CCGCGCCGAAGATCAGGGCGACGTGGTAGGCATCGTTCACAGCCACCCTGACGCCACCAG 31665 || || || | |||||| ||| | ||||| || ||| ||||| ||||||||||| Sbjct 1518 TGCAGCGGAGGACCTGGGCGAGGTGATCGGCATTGTCCACTCGCACCCGGACGCCACCAG 1459 Query 31666 CCAGCCGAGCGAGCTGGATAAGGCGCAGTGCGACGTTACAGAGCTGCCCTGGCATATCCT 31725 || |||| || || ||| ||| || || || | |||||||||| || || Sbjct 1458 CCGGCCGTCACCGCACGACTTGGCCATGTGTGAGGTCACGGCCTTGCCCTGGCACATTCT 1399 Query 31726 GAGCTGGCCCGAGGGCGATTTACGCACCATC 31756 | ||||||||||| ||||| || || ||| Sbjct 1398 GTCGTGGCCCGAGGGGGATTTGCGGACGATC 1368 >seq8566 Length=6269 Score = 109 bits (120), Expect = 1e-19 Identities = 244/364 (67%), Gaps = 12/364 (3%) Strand=Plus/Minus Query 33564 AACTATGACCCCGACACCCGCAGCTATACCGGCACCTGGGATGGCACGTTTAAATGGGCG 33623 ||||||||||| | | || | || | ||| | ||||||||| ||| | ||| ||| Sbjct 3645 AACTATGACCCAGTTTCGCGGACATACAGCGGTATCTGGGATGGGACGCTGAAAGAGGCT 3586 Query 33624 TGGACGGATAACCCGGCCTGGGTGTTTTACGACCTGGTGATCACTGATCGCTTCGGACTC 33683 | || ||||||| | ||||| | |||| | | | ||| ||||| || | Sbjct 3585 TACACCAATAACCCAGTCTGGGCGACCTACGGAATAACCACCGTTGACCGCTTTGGCTTG 3526 Query 33684 GGCGACCGGCTGGACGCC---GATAACGTGGACAAATGGGCGCTCTACCAGGTGGCGCAA 33740 ||| ||| | | ||| ||| || ||||| |||| ||| || | | |||| Sbjct 3525 GGCCGCCGCATCAA-GCCTTGGATG--GTCGACAAGTGGGAGCTTTATCGCATCTCGCAG 3469 Query 33741 TACTGCGATCAGATGGTGCCGGACGGCAGGGGCGGCGACGGCAAAGAGCCACGCTATATG 33800 |||||||| ||| ||||||||||||| | ||| |||| | ||||| |||| || Sbjct 3468 TACTGCGACCAGTTGGTGCCGGACGGTAAGGG------CGGCCAGGAGCCGCGCTTCATC 3415 Query 33801 TGCAACGTCTACGTGCAGAGCCGGGCCGACGCATTCACGGTTTTGCGCGACTTTGCGGCC 33860 |||||| | || | |||||| ||||||||| | || | |||| ||| | |||| Sbjct 3414 TGCAACCTGAACCTACAGAGCAAGGCCGACGCCTGGTCGTTGCTGCGTGACATCTCGGCG 3355 Query 33861 ATCTTCCGGGGCATGACTTACTGGGGTGGCGATCAGCTCGTTACGCTGGCAGACATGCCG 33920 |||| |||||| ||||| ||||||| | ||| | | || ||| | || |||||| Sbjct 3354 ATCTACCGGGGGATGACCTACTGGGCCCAAGGCCAGGTGTTCACCCTGTCGGATATGCCG 3295 Query 33921 CGCG 33924 |||| Sbjct 3294 CGCG 3291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127735388092416