Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq26061 206 5e-48 seq34427 91.5 3e-13 >seq26061 Length=1673 Score = 206 bits (228), Expect = 5e-48 Identities = 567/857 (66%), Gaps = 19/857 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||||||| || | || || |||||||||||||| || | || |||||| |||||| Sbjct 1268 GTAGTCCGAAACGCGCTTTTCGAAGAAGTTTGTCTTGCCTTGCAGGGAGATGAGCTCCAT 1209 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCAGGT 47960 |||| ||| ||||| | ||||| || | | || || || | | ||| Sbjct 1208 GAAGTCGAACGGGTTCGCCGTGTTGTAGTACT-TCTCGTAGCCGAGAGTCACGAACAGTC 1150 Query 47961 GATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACA 48020 | || ||| |||||||||| || | ||| ||| | ||||||| || || || | Sbjct 1149 GGTCGCACACGAACTCGATGTACTTCGCCATCAGGTCGCTGTTCATCCCGATCAGCTTGA 1090 Query 48021 CGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCA-CAAT-CTG 48078 | |||| || | || | |||||||||||| || || || ||| | | |||| | Sbjct 1089 CCGGCAGTGCGTCCGTTACAAACTCCTTCTCGATGGCTACAGCCTCCGCAAGCAATTCCA 1030 Query 48079 CTTAACGCGGGACTCTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 | |||| |||||| || ||| | | ||||| ||||||| |||||| | Sbjct 1029 CCACACGCTCCCTGCTGAGGCGTGTGTA---CTCGAGCTTGTTGTAGAGCAGGCAGGCGA 973 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| | ||||| ||| ||||| ||| |||| | |||| | ||| || || |||| Sbjct 972 AGTCGCAGTGCATGCCCTCGTCTCGGGAGATGTACTCGTTCGTGAACGTCAGCCCCGGCA 913 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 | | ||||| || || |||||||| || | ||| || || |||||||||||||||| Sbjct 912 TCAGCCCCCGCTTCTTCAGCCAGAAGATCGAGCAGAACGACCCGGAGAAGAAGATGCCCT 853 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 |||| || ||||||||| ||||||||| |||| | ||| || | |||||| Sbjct 852 CCACCGCTGCGAACGCGACGAGCCTCTCCGCGAACGTGGCGGAGCTGCC---GATCCACT 796 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT 48377 | ||||| || ||||||||| ||| ||| |||| |||| || ||| ||| ||| Sbjct 795 TGATGGCCCACTCGGCCTTCTTCGTGACGCACGGCACCGTCGAGATCGCCTTGAACAGCG 736 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAG 48434 | | || | || | | || || ||||||| | |||| |||| | Sbjct 735 TGTCTTTTTCGGCGTTGTTCTTGATGTACGTGTCGATGAGCAGACT---GTACGTCTCGG 679 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 | || | || || || ||||||||||||||||||||| || |||||| | ||| | Sbjct 678 AATGGATGTTTTCGATCGCGATCTGGAACCCGTAGAAGCACCGGGCCTCGGGGATCTGGA 619 Query 48495 CTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || | ||| | | ||| || ||||| ||| || || || ||||| || ||| Sbjct 618 TGTCGTTCATGAACCGC-GAAGCGAGGTTCTCGAGGACGATGCCGTCGGAAGCGGCGAAG 560 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 || || ||||| || | | ||| || ||||| || | |||| | | |||| ||| Sbjct 559 AACGCGAGGACGTGGGTGATGAAGTGTCGCTCCCCGTCGTTGAGGCCCTCCCAGTCCTTC 500 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTAC 48673 | ||| ||||||| || ||||| || |||||||| || || || |||||| Sbjct 499 AGGTCGGCCGCCAGGTCAACCTCTTCGACCGTCCAGAATGAGGCCTCCGCGGCCTTGTAC 440 Query 48674 ATGCCCCATATGTCCGG 48690 || ||| |||||||| Sbjct 439 ATCTGCCAGATGTCCGG 423 >seq34427 Length=4033 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 213903 AGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTC 213962 || || || ||||||||||||||||||||||| | ||||||||| |||| ||| | | Sbjct 3710 AGGAACTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAAGGAACCCTTTCGC 3651 Query 213963 TTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACC 214019 ||| ||||| ||||| || | ||| |||||| | ||| || | ||||| Sbjct 3650 TTGCCTCCGCCTTGGTCGACGTAACGCGCCGTGTCGTTGAACACGCGAAGCATCGGTACG 3591 Query 214020 AGCCCGTTGGACTGTCCGTTGGTTCC 214045 || |||||||| || ||||||||||| Sbjct 3590 AGGCCGTTGGATTGCCCGTTGGTTCC 3565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931073868721920