Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_019705.1 Length=38759 Score E Sequences producing significant alignments: (Bits) Value seq8567 149 2e-31 seq8566 80.6 7e-11 >seq8567 Length=29384 Score = 149 bits (164), Expect = 2e-31 Identities = 334/492 (68%), Gaps = 10/492 (2%) Strand=Plus/Minus Query 11837 GGATGAATGCAACGGAACGCTGACGGCCTGCAAACTTCGGTTCGGTGAAAACAACGAACT 11896 |||| ||||||| || ||| || ||||||| | || ||||| || | ||||||||| Sbjct 1793 GGATCAATGCAAAGGCTGTCTGTCGTCCTGCAAGTTGCGATTCGGCGAGAGCAACGAACT 1734 Query 11897 CTCGTTTGGTGGGTTCCCGGGTACGTCGCTGAT---CAGGAGTTGAT-ATGCGTCAGAAA 11952 || || || || ||||| | ||| || || |||||| ||| ||||| || | Sbjct 1733 TTCCTTCGGCGGATTCCCCGCCGTGTCCCTCATTGCCAGGAGCTGACCATGCGCAAGCAC 1674 Query 11953 ACCATCGATGCCATCATGGCGCATGCCGCTGCGGAATACCCGCGAGAGTGCTGCGGCGTG 12012 | || | || ||| ||||||||| || ||||| || ||| |||||||||||| || Sbjct 1673 ATAATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAGTGCTGCGGGCTG 1614 Query 12013 GTGGCGCAGAAAAGCCGGGTTGAGCGTTATTTCCCCTGCCGCAACCTTTCTGAAGAGCCG 12072 || | | | |||| || || ||||| ||||| ||| | | |||||| Sbjct 1613 CTGCTGGCTGTAGGGCGGGCGCAGAAGTACTTCCCATGCCGGAACATCGCCACGGAGCCG 1554 Query 12073 ACAGAACATTTTCACCTTTCTCCCGAAGACTACGCAGCTGCCGAAGAC-TGGGGGACGGT 12131 | ||| | |||| ||| ||| || |||||||| || || || ||| |||| || ||| Sbjct 1553 AACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGACCTGGGCGA-GGT 1495 Query 12132 GGTAGCCATTGTTCACAGCCACCCTGACGCGACGACGCAGGCCAGCGA-GCTTGATAAGG 12190 | | | |||||| ||| ||||| ||||| || | || |||| | || || || Sbjct 1494 GATCGGCATTGTCCACTCGCACCCGGACGCCACCA-GCCGGCCGTCACCGCACGACTTGG 1436 Query 12191 CGCAATGTGATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCGGAGGGGGATTTAC 12250 | ||||| | ||| |||||||||| ||| || ||||| ||||||||||| | Sbjct 1435 CCATGTGTGAGGTCACGGCCTTGCCCTGGCACATTCTGTCGTGGCCCGAGGGGGATTTGC 1376 Query 12251 GCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTTTGTGCTTGGACAC 12309 | || ||| ||| || | | || ||||||||| |||| |||||||| | ||| | Sbjct 1375 GGACGATCACGCCAACGGGCCGCAC-GCCACTGCTCAAGCGCCCGTTTGTACATGGCGCC 1317 Query 12310 TTCGACTGCTGG 12321 | ||||| ||| Sbjct 1316 TGGGACTGTTGG 1305 >seq8566 Length=6269 Score = 80.6 bits (88), Expect = 7e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 14327 AAAATCGGCGACACGATGATGCT-GCAGAGCTTCACCGAGGTGATTGATGCCAAACTGCG 14385 |||||| |||||||||| | | || | ||||||| | |||||| || ||||| |||| Sbjct 3810 AAAATCTCCGACACGATGCAGATCGCCG-GCTTCACGGGGGTGATCGACGCCAAGTTGCG 3752 Query 14386 CTACCCGAACACCGCGCTGCTCTACGTCGAATT 14418 ||||||||||||||| |||||||| |||| || Sbjct 3751 GTACCCGAACACCGCGTTGCTCTACATCGAGTT 3719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123849207790626