Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq8567 122 2e-23 seq8566 87.8 5e-13 >seq8567 Length=29384 Score = 122 bits (134), Expect = 2e-23 Identities = 324/491 (66%), Gaps = 8/491 (2%) Strand=Plus/Minus Query 12646 GGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGAAAATAACGAACT 12705 |||| ||||||| ||| ||| || ||||||| | ||||||||||| | |||||||| Sbjct 1793 GGATCAATGCAAAGGCTGTCTGTCGTCCTGCAAGTTGCGATTCGGCGAGAGCAACGAACT 1734 Query 12706 CTCGTTTGGTGGCTTCCCTGGTACGTCGCTGAT---CAGGAGTTGA-TATGCGTCAGAAA 12761 || || || || ||||| | ||| || || |||||| ||| ||||| || | Sbjct 1733 TTCCTTCGGCGGATTCCCCGCCGTGTCCCTCATTGCCAGGAGCTGACCATGCGCAAGCAC 1674 Query 12762 ACCATCGATGCGATTATGGCGCATGCCGCCGCTGAATATCCTCGTGAGTGCTGCGGTGTG 12821 | || | ||||| ||||||||| || || || ||||| ||||||||||| || Sbjct 1673 ATAATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAGTGCTGCGGGCTG 1614 Query 12822 GTGGCGCAAAAAAGCCGTGTTGAACGTTATTTTCCTTGCCGGAATCTTGCCGCTGCGCCG 12881 || | | | || | | || || || |||||||| | ||| | | |||| Sbjct 1613 CTGCTGGCTGTAGGGCGGGCGCAGAAGTACTTCCCATGCCGGAACATCGCCACGGAGCCG 1554 Query 12882 AAGGAAAATTTTGTCCTCTGCCCGGAAGATTACGCAGCTGCTGAGGACTGGGGTACGGTG 12941 || ||| | ||| || || || || ||||| || || |||||| ||| |||| Sbjct 1553 AACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGACCTGGGCGAGGTG 1494 Query 12942 ATCGCCATCGTTCACAGCCACCCTGACGCCACTACGCAGCCG--AGCGAACTGGATAAAG 12999 |||| ||| || ||| ||||| |||||||| | | |||| | || || || | Sbjct 1493 ATCGGCATTGTCCACTCGCACCCGGACGCCACCAGCCGGCCGTCACCGCAC--GACTTGG 1436 Query 13000 CGCAATGCGACGCAACGCTTTTACCCTGGCATATCGTGAGCTGGCCCGAGGGGGATTTAC 13059 | || || | ||| || |||||||| || || ||||||||||||||||| | Sbjct 1435 CCATGTGTGAGGTCACGGCCTTGCCCTGGCACATTCTGTCGTGGCCCGAGGGGGATTTGC 1376 Query 13060 GTACCATTCAGCCGCGTGGTGAGTTGCCACTGCTGGAGCGTCCGTTTGTGCTTGGACACT 13119 | || || ||| || ||||||||| |||| |||||||| | ||| || Sbjct 1375 GGACGATCACGCCAACGGGCCGCACGCCACTGCTCAAGCGCCCGTTTGTACATGGCGCCT 1316 Query 13120 TCGACTGCTGG 13130 ||||| ||| Sbjct 1315 GGGACTGTTGG 1305 >seq8566 Length=6269 Score = 87.8 bits (96), Expect = 5e-13 Identities = 357/558 (64%), Gaps = 6/558 (1%) Strand=Plus/Minus Query 15739 CGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGCG 15798 || || ||| ||||| |||||| || | |||||||| |||||| | |||| ||||| Sbjct 3120 CGCTATGGCGACAATCCGCTGGAGATCAGTGCCATCGGTTGCACCCGCGAGTCGGAGGCT 3061 Query 15799 AACCGAAAGGGGCGCTGGGGTATTCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGAT 15858 | || || |||| | || || ||| |||||| | | ||| | || | Sbjct 3060 CAGCGCCGCGGCAAGTGGGCGCTGCTGACAAACTCCAAGGACAGGGCTGTCACATTCAAG 3001 Query 15859 GTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCTG 15918 ||||| || || || ||| |||| || || ||| | ||| | | || ||||||||| Sbjct 3000 GTCGGCCTTGATGGGCGCATCCCGCTCCCTGGATACGTGATCCCAATCGCGGACGAGCTG 2941 Query 15919 CTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACTT 15978 || | || | ||||||| |||||| || || ||||| || |||| || Sbjct 2940 CTGGCGGGCCGGCCGGTGGGCGGGCGCATCTCTGCGGTGAACGGCAAAGTCATCACCCTG 2881 Query 15979 GACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTGCCTTCCGGAGCG 16038 ||||||| | | || || ||||| ||||| || |||||||||||| |||| | Sbjct 2880 GACCGCGATACCCAGGCGAAGCCCGGTGACCGCCTGATCCTCAACCTGCCTGACGGAAAG 2821 Query 16039 TCGCAGAGCAGGACCATTCAGGCCGTGAACGGGGAATCAGTCACAGTCACCACGGCATAC 16098 | || || | ||| | || || | ||| ||||| ||||||||||| ||| Sbjct 2820 TGCGAGGGCCGCACCGTGCAACTGGTCAGCGGCCGCCAGGTCACGGTCACCACGGCGTAC 2761 Query 16099 AGTGAGACGCCACAGGCCGAAGCTGTTTGGGTGGTTGAATCTGACGAGCTTTACGCGCAG 16158 | | |||| || ||| || |||| | | || ||||||| || | | | Sbjct 2760 TCCGTGGCGCCTGAGCGTGAACTGGTGTGGGCGCTCGACGCTGACGACCTGGCCATCCCG 2701 Query 16159 CAGTATCGTGTTGTCAGCGTCT-CCGACAACGGTGATGGCACTTTCTCAATCAC--CGGC 16215 | |||||| || |||||| | ||| | | | |||| ||| |||| | | | Sbjct 2700 CTGTATCGGGTGACCAGCGTTTCCCGGCCA-GAGCCTGGCGTGTTCGAAATCTCGGCTGT 2642 Query 16216 GCATGGCACGACCCGGATAAATATGCCCACATCGATACCGGAGCCATCATTGACCAGCGG 16275 ||| | |||||||| || | || |||||||| ||||| || | || ||||| Sbjct 2641 GCA--GTACGACCCGAGCAAGTTCGCGCACATCGACACCGGCGCTCGGCTGGAAGAGCGG 2584 Query 16276 CCGGTGAGCGTGATCCCG 16293 ||| | ||||| || ||| Sbjct 2583 CCGATCAGCGTTATTCCG 2566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132830602265874