Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_019714.1 Length=39026 Score E Sequences producing significant alignments: (Bits) Value seq8567 134 3e-27 seq8566 82.4 2e-11 >seq8567 Length=29384 Score = 134 bits (148), Expect = 3e-27 Identities = 329/492 (67%), Gaps = 10/492 (2%) Strand=Plus/Minus Query 12693 GGATGAATGCAACGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGAAAATAACGAACT 12752 |||| ||||||| ||| ||| || ||||||| | ||||||||||| | |||||||| Sbjct 1793 GGATCAATGCAAAGGCTGTCTGTCGTCCTGCAAGTTGCGATTCGGCGAGAGCAACGAACT 1734 Query 12753 CTCGTTTGGTGGCTTCCCGGGCACGTCTTTGAT---CAGGAGTTGA-TATGCGTCAGAAA 12808 || || || || ||||| | | ||| | || |||||| ||| ||||| || | Sbjct 1733 TTCCTTCGGCGGATTCCCCGCCGTGTCCCTCATTGCCAGGAGCTGACCATGCGCAAGCAC 1674 Query 12809 ACCATCGATGCGATTATGGCGCATGCCGCCGCTGAATATCCTCGTGAGTGCTGCGGTGTG 12868 | || | ||||| ||||||||| || || || ||||| ||||||||||| || Sbjct 1673 ATAATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAGTGCTGCGGGCTG 1614 Query 12869 GTGGCGCAAAAAAGCCGTGTTGAACGTTATTTTCCTTGCCGGAATCTTGCCGCTGCGCCG 12928 || | | | || | | || || || |||||||| | ||| | | |||| Sbjct 1613 CTGCTGGCTGTAGGGCGGGCGCAGAAGTACTTCCCATGCCGGAACATCGCCACGGAGCCG 1554 Query 12929 AAGGAAAATTTTGTCCTCTGCCCGGAAGATTACGCAGCTGCTGAGGACTGGGGTACGGTG 12988 || ||| | ||| || || || || ||||| || || |||||| ||| |||| Sbjct 1553 AACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGACCTGGGCGAGGTG 1494 Query 12989 ATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCG--AGCGAACTGGATAAAG 13046 |||| ||| || ||| ||||| |||||||| | | |||| | || || || | Sbjct 1493 ATCGGCATTGTCCACTCGCACCCGGACGCCACCAGCCGGCCGTCACCGCAC--GACTTGG 1436 Query 13047 CGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCGGAGGGGGATTTAC 13106 | || || | ||| || |||||||| ||| || ||||| ||||||||||| | Sbjct 1435 CCATGTGTGAGGTCACGGCCTTGCCCTGGCACATTCTGTCGTGGCCCGAGGGGGATTTGC 1376 Query 13107 GCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTTTGTGCTTGGACAC 13165 | || ||| ||| || | | || ||||||||| |||| |||||||| | ||| | Sbjct 1375 GGACGATCACGCCAACGGGCCGCAC-GCCACTGCTCAAGCGCCCGTTTGTACATGGCGCC 1317 Query 13166 TTCGACTGCTGG 13177 | ||||| ||| Sbjct 1316 TGGGACTGTTGG 1305 >seq8566 Length=6269 Score = 82.4 bits (90), Expect = 2e-11 Identities = 234/360 (65%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 15786 CGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGCG 15845 || || ||| ||||| |||||| || | |||||||| |||||| | |||| ||||| Sbjct 3120 CGCTATGGCGACAATCCGCTGGAGATCAGTGCCATCGGTTGCACCCGCGAGTCGGAGGCT 3061 Query 15846 AACCGAAAGGGGCGCTGGGGTATTCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGAT 15905 | || || |||| | || || ||| |||||| | | ||| | || | Sbjct 3060 CAGCGCCGCGGCAAGTGGGCGCTGCTGACAAACTCCAAGGACAGGGCTGTCACATTCAAG 3001 Query 15906 GTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCTG 15965 ||||| || || || ||| |||| || || ||| | ||| | | || ||||||||| Sbjct 3000 GTCGGCCTTGATGGGCGCATCCCGCTCCCTGGATACGTGATCCCAATCGCGGACGAGCTG 2941 Query 15966 CTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACTT 16025 || | || | ||||||| |||||| || || ||||| || |||| || Sbjct 2940 CTGGCGGGCCGGCCGGTGGGCGGGCGCATCTCTGCGGTGAACGGCAAAGTCATCACCCTG 2881 Query 16026 GACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTGCCTTCCGGAGCG 16085 ||||||| | | || || ||||| ||||| || |||||||||||| |||| | Sbjct 2880 GACCGCGATACCCAGGCGAAGCCCGGTGACCGCCTGATCCTCAACCTGCCTGACGGAAAG 2821 Query 16086 TCGCAGAGCAGGACCATTCAGGCCGTGAACGGGGAATCAGTCACAGTCACCACGGCATAC 16145 | || || | ||| | || || | ||| ||||| ||||||||||| ||| Sbjct 2820 TGCGAGGGCCGCACCGTGCAACTGGTCAGCGGCCGCCAGGTCACGGTCACCACGGCGTAC 2761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124703207906328