Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq8567 156 1e-33 seq8566 80.6 7e-11 >seq8567 Length=29384 Score = 156 bits (172), Expect = 1e-33 Identities = 336/493 (68%), Gaps = 12/493 (2%) Strand=Plus/Minus Query 12698 GGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGAAAATAACGAACT 12757 |||| ||||||| ||| ||| || ||||||| | ||||||||||| | |||||||| Sbjct 1793 GGATCAATGCAAAGGCTGTCTGTCGTCCTGCAAGTTGCGATTCGGCGAGAGCAACGAACT 1734 Query 12758 CTCGTTTGGTGGCTTCCCTGGTACGTCGCTGAT---CAGGAGTTGA-TATGCGTCAGAAA 12813 || || || || ||||| | ||| || || |||||| ||| ||||| || | Sbjct 1733 TTCCTTCGGCGGATTCCCCGCCGTGTCCCTCATTGCCAGGAGCTGACCATGCGCAAGCAC 1674 Query 12814 ACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGTGTTGTGGCGTG 12873 | || | ||||| ||||||||| ||||| || ||||| ||||| || || || Sbjct 1673 ATAATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAGTGCTGCGGGCTG 1614 Query 12874 GTG-GCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCTCGCTACCGAGCC 12932 || || || | |||| |||| || || ||||| | ||| |||| || ||||| Sbjct 1613 CTGCTGGCTGTAG-GGCGGGCGCAGAAGTACTTCCCATGCCGGAACATCGCCACGGAGCC 1555 Query 12933 GACAGAACATTTTCACCTGTCTCCAGAAGACTATGCAGCTGCTGAGGACTGGGGTACGGT 12992 || ||| | |||| || ||| || ||||| || || || |||||| ||| ||| Sbjct 1554 GAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGACCTGGGCGAGGT 1495 Query 12993 GATCGCCATCGTTCACAGTCACCCTGACGCCACAACGCAGCCG--AGCGAACTGGATAAA 13050 ||||| ||| || ||| ||||| |||||||| | | |||| | || || || Sbjct 1494 GATCGGCATTGTCCACTCGCACCCGGACGCCACCAGCCGGCCGTCACCGCAC--GACTTG 1437 Query 13051 GCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCGGAGGGGGATTTA 13110 || || || | ||| || |||||||| ||| || ||||| ||||||||||| Sbjct 1436 GCCATGTGTGAGGTCACGGCCTTGCCCTGGCACATTCTGTCGTGGCCCGAGGGGGATTTG 1377 Query 13111 CGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTTTGTGCTTGGACA 13169 || || ||| ||| || | | || ||||||||| |||| |||||||| | ||| Sbjct 1376 CGGACGATCACGCCAACGGGCCGCAC-GCCACTGCTCAAGCGCCCGTTTGTACATGGCGC 1318 Query 13170 CTTCGACTGCTGG 13182 || ||||| ||| Sbjct 1317 CTGGGACTGTTGG 1305 >seq8566 Length=6269 Score = 80.6 bits (88), Expect = 7e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 15099 AAGATCGGCGACACGATGATGCT-GCAGAGCTTCACCGAGGTGATTGACGCCAAACTGCG 15157 || ||| |||||||||| | | || | ||||||| | |||||| |||||||| |||| Sbjct 3810 AAAATCTCCGACACGATGCAGATCGCCG-GCTTCACGGGGGTGATCGACGCCAAGTTGCG 3752 Query 15158 CTACCCGAACACCGCGCTGCTCTACGTCGAATT 15190 ||||||||||||||| |||||||| |||| || Sbjct 3751 GTACCCGAACACCGCGTTGCTCTACATCGAGTT 3719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132705860675940