Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_019767.1 Length=40155 Score E Sequences producing significant alignments: (Bits) Value seq8567 150 5e-32 seq8566 80.6 7e-11 >seq8567 Length=29384 Score = 150 bits (166), Expect = 5e-32 Identities = 336/494 (68%), Gaps = 14/494 (3%) Strand=Plus/Minus Query 12636 GGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGAAAATAACGAACT 12695 |||| ||||||| ||| ||| || ||||||| | ||||||||||| | |||||||| Sbjct 1793 GGATCAATGCAAAGGCTGTCTGTCGTCCTGCAAGTTGCGATTCGGCGAGAGCAACGAACT 1734 Query 12696 CTCGTTTGGTGGCTTCCCGGGCACGTCTTTGAT---CAGGAGTTGA-TATGCGTCAGAAA 12751 || || || || ||||| | | ||| | || |||||| ||| ||||| || | Sbjct 1733 TTCCTTCGGCGGATTCCCCGCCGTGTCCCTCATTGCCAGGAGCTGACCATGCGCAAGCAC 1674 Query 12752 ACCATAGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCTTGAGTGTTGCGGCGTG 12811 | || | ||||| ||||||||| ||||| || ||||| ||||| ||||| || Sbjct 1673 ATAATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAGTGCTGCGGGCTG 1614 Query 12812 GTG-GCGCAGAAAAGC-CGCGTTGAACGTTATTTCCCGTGCCGGAATCTTGCCGCGGCGC 12869 || || | | || ||| ||| || ||||| |||||||| | ||| ||| || Sbjct 1613 CTGCTGGCTGTAGGGCGGGCGCAGAA--GTACTTCCCATGCCGGAACATCGCCACGGAGC 1556 Query 12870 CGGAGGACAATTTTGTCCTTTGCCCCGAAGACTACGCAGCTGCTGAGGACTGGGGAACGG 12929 || | || | ||| ||| || || |||||||| || || |||||| ||| || Sbjct 1555 CGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGACCTGGGCGAGG 1496 Query 12930 TGATCGCCATCGTTCACAGTCACCCTGACGCCACAACGCAGCCG--AGCGAACTGGATAA 12987 |||||| ||| || ||| ||||| |||||||| | | |||| | || || || Sbjct 1495 TGATCGGCATTGTCCACTCGCACCCGGACGCCACCAGCCGGCCGTCACCGCAC--GACTT 1438 Query 12988 AGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCGGAGGGGGATTT 13047 || || || | ||| || |||||||| ||| || ||||| ||||||||||| Sbjct 1437 GGCCATGTGTGAGGTCACGGCCTTGCCCTGGCACATTCTGTCGTGGCCCGAGGGGGATTT 1378 Query 13048 ACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTTTGTGCTTGGAC 13106 || || ||| ||| || | | || ||||||||| |||| |||||||| | ||| Sbjct 1377 GCGGACGATCACGCCAACGGGCCGCAC-GCCACTGCTCAAGCGCCCGTTTGTACATGGCG 1319 Query 13107 ACTTCGACTGCTGG 13120 || ||||| ||| Sbjct 1318 CCTGGGACTGTTGG 1305 >seq8566 Length=6269 Score = 80.6 bits (88), Expect = 7e-11 Identities = 284/444 (64%), Gaps = 0/444 (0%) Strand=Plus/Minus Query 15729 CGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGCG 15788 || || ||| ||||| |||||| || | |||||||| |||||| | |||| ||||| Sbjct 3120 CGCTATGGCGACAATCCGCTGGAGATCAGTGCCATCGGTTGCACCCGCGAGTCGGAGGCT 3061 Query 15789 AACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGAT 15848 | || || |||| | || || || |||||| | | ||| | || | Sbjct 3060 CAGCGCCGCGGCAAGTGGGCGCTGCTGACAAACTCCAAGGACAGGGCTGTCACATTCAAG 3001 Query 15849 GTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCTG 15908 ||||| || || || ||| |||| || || ||| | ||| | | || ||||||||| Sbjct 3000 GTCGGCCTTGATGGGCGCATCCCGCTCCCTGGATACGTGATCCCAATCGCGGACGAGCTG 2941 Query 15909 CTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACTT 15968 || | || | ||||||| |||||| || || ||||| || |||| || Sbjct 2940 CTGGCGGGCCGGCCGGTGGGCGGGCGCATCTCTGCGGTGAACGGCAAAGTCATCACCCTG 2881 Query 15969 GACCGCGTAGCTGATGCAACACCAGGTGATCGCCTTATTCTCAACCTTCCCTCCGGAGCG 16028 ||||||| | | || | || ||||| ||||| || |||||||| || |||| | Sbjct 2880 GACCGCGATACCCAGGCGAAGCCCGGTGACCGCCTGATCCTCAACCTGCCTGACGGAAAG 2821 Query 16029 TCGCAGAGCAGGACCATTCAGGCCGTGAACGGGGAATCAGTCACAGTCACCACGGCATAC 16088 | || || | ||| | || || | ||| ||||| ||||||||||| ||| Sbjct 2820 TGCGAGGGCCGCACCGTGCAACTGGTCAGCGGCCGCCAGGTCACGGTCACCACGGCGTAC 2761 Query 16089 AGTGAGACGCCACAGGCCGAAGCTGTTTGGGTGGTTGAATCTGACGAGCTCTACGCGCAG 16148 | | |||| || ||| || |||| | | || ||||||| || | | | Sbjct 2760 TCCGTGGCGCCTGAGCGTGAACTGGTGTGGGCGCTCGACGCTGACGACCTGGCCATCCCG 2701 Query 16149 CAGTATCGAGTTGTCAGCGTTTCC 16172 | |||||| || |||||||||| Sbjct 2700 CTGTATCGGGTGACCAGCGTTTCC 2677 Score = 80.6 bits (88), Expect = 7e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 15036 AAGATCGGCGACACGATGATGCT-GCAGAGCTTCACCGAGGTGATTGACGCCAAACTGCG 15094 || ||| |||||||||| | | || | ||||||| | |||||| |||||||| |||| Sbjct 3810 AAAATCTCCGACACGATGCAGATCGCCG-GCTTCACGGGGGTGATCGACGCCAAGTTGCG 3752 Query 15095 CTACCCGAACACCGCGCTGCTCTACGTCGAATT 15127 ||||||||||||||| |||||||| |||| || Sbjct 3751 GTACCCGAACACCGCGTTGCTCTACATCGAGTT 3719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128314317009802