Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_019769.1 Length=38964 Score E Sequences producing significant alignments: (Bits) Value seq8567 156 1e-33 seq8566 80.6 7e-11 >seq8567 Length=29384 Score = 156 bits (172), Expect = 1e-33 Identities = 337/494 (68%), Gaps = 14/494 (3%) Strand=Plus/Minus Query 12201 GGATGAATGCAACGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGAAAATAACGAACT 12260 |||| ||||||| ||| ||| || ||||||| | ||||||||||| | |||||||| Sbjct 1793 GGATCAATGCAAAGGCTGTCTGTCGTCCTGCAAGTTGCGATTCGGCGAGAGCAACGAACT 1734 Query 12261 CTCGTTTGGTGGCTTCCCGGGCACGTCTTTGAT---CAGGAGTTGA-TATGCGTCAGAAA 12316 || || || || ||||| | | ||| | || |||||| ||| ||||| || | Sbjct 1733 TTCCTTCGGCGGATTCCCCGCCGTGTCCCTCATTGCCAGGAGCTGACCATGCGCAAGCAC 1674 Query 12317 ACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCATGAGTGTTGCGGCGTG 12376 | || | ||||| ||||||||| ||||| || ||||| | ||||| ||||| || Sbjct 1673 ATAATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAGTGCTGCGGGCTG 1614 Query 12377 GTG-GCGCAGAAAAGC-CGCGTTGAACGTTATTTCCCGTGCCGGAATCTTGCCGCGGCGC 12434 || || | | || ||| ||| || ||||| |||||||| | ||| ||| || Sbjct 1613 CTGCTGGCTGTAGGGCGGGCGCAGAA--GTACTTCCCATGCCGGAACATCGCCACGGAGC 1556 Query 12435 CGGAGGACAATTTTGTCCTTTGCCCCGAAGACTACGCAGCTGCTGAGGACTGGGGAACGG 12494 || | || | ||| ||| || || |||||||| || || |||||| ||| || Sbjct 1555 CGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGACCTGGGCGAGG 1496 Query 12495 TGATCGCCATCGTTCACAGTCACCCTGACGCCACAACGCAGCCG--AGCGAACTGGATAA 12552 |||||| ||| || ||| ||||| |||||||| | | |||| | || || || Sbjct 1495 TGATCGGCATTGTCCACTCGCACCCGGACGCCACCAGCCGGCCGTCACCGCAC--GACTT 1438 Query 12553 AGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCGGAGGGGGATTT 12612 || || || | ||| || |||||||| ||| || ||||| ||||||||||| Sbjct 1437 GGCCATGTGTGAGGTCACGGCCTTGCCCTGGCACATTCTGTCGTGGCCCGAGGGGGATTT 1378 Query 12613 ACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTTTGTGCTTGGAC 12671 || || ||| ||| || | | || ||||||||| |||| |||||||| | ||| Sbjct 1377 GCGGACGATCACGCCAACGGGCCGCAC-GCCACTGCTCAAGCGCCCGTTTGTACATGGCG 1319 Query 12672 ACTTCGACTGCTGG 12685 || ||||| ||| Sbjct 1318 CCTGGGACTGTTGG 1305 >seq8566 Length=6269 Score = 80.6 bits (88), Expect = 7e-11 Identities = 524/837 (63%), Gaps = 30/837 (4%) Strand=Plus/Minus Query 14917 GATAAATGGACGCTTTATCAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAA 14976 || || ||| |||||||| | | ||||| || || ||| |||| || ||||| || Sbjct 3498 GACAAGTGGGAGCTTTATCGCATCTCGCAGTACTGCGACCAGTTGGTGCCGGACGGTAAG 3439 Query 14977 GGGGGCAACGGTACAGAACCACGCTATACCTGCAACGTGTACATTCAGGACCGGAACGAC 15036 || ||| | | | || |||| | ||||||| || || | ||| | | |||| Sbjct 3438 GGCGGCCAGG------AGCCGCGCTTCATCTGCAACCTGAACCTACAGAGCAAGGCCGAC 3385 Query 15037 GCCTACACAGTCCTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGG 15096 |||| | | |||||||| | | || |||| ||| || ||||||||||||| | Sbjct 3384 GCCTGGTCGTTGCTGCGTGACATCTCGGCGATCTACCGGGGGATGACCTACTGGGCCCAA 3325 Query 15097 GATCAGATTGTGGCCCTGGCTGACATGCCGCGCG------ATGTTGATTACAGCTATACG 15150 | ||| | | ||||| | || |||||||||| | |||| | | |||||| Sbjct 3324 GGCCAGGTGTTCACCCTGTCGGATATGCCGCGCGCCACCGACTTTGACTTCGCCTATACC 3265 Query 15151 CGCGCTAACGTTGTTGGCGGTCGCTTCACCTATTCGAGCAGCACCACGAAAAGC---CGC 15207 || || ||||| | | || ||||||||||| |||| | || | || || Sbjct 3264 CGGGCAAACGTCATCGATGGCAAGTTCACCTATTC---CAGCGCGTCGGAGCGCACCCGG 3208 Query 15208 TACACCACAGCGCTGGTTTCATG-GTCAGACCCGGGTAACGCTTATGCC---GACGCGAT 15263 |||||| || ||| | | | || |||| ||| ||| | | |||| | Sbjct 3207 TACACCCGCGCACTGATCAGCTACGACA-ACCCACTGAACAATTACGACACTGACGTCAC 3149 Query 15264 GGAGCCGGTATTTGAG--CAGGCGCTGGTGGCGCGGTACGGCTTCAATCAGCTGGAAATG 15321 | |||| ||| || || | | ||| || ||| ||||| |||||| || Sbjct 3148 TG---CGGTTACTGATGCCAAGCTTCAGCGTCGC--TATGGCGACAATCCGCTGGAGATC 3094 Query 15322 ACAGCCATCGGCTGCACCAGGCAGTCAGAGGCGAACCGAAAGGGGCGCTGGGGTATTCTC 15381 | |||||||| |||||| | |||| ||||| | || || |||| | || Sbjct 3093 AGTGCCATCGGTTGCACCCGCGAGTCGGAGGCTCAGCGCCGCGGCAAGTGGGCGCTGCTG 3034 Query 15382 ACCAATAACAAGGATCGCGTTGTTTCGTTTGATGTCGGGCTGGACGGAAACATTCCGCAG 15441 || || |||||| | | ||| | || | ||||| || || || ||| |||| Sbjct 3033 ACAAACTCCAAGGACAGGGCTGTCACATTCAAGGTCGGCCTTGATGGGCGCATCCCGCTC 2974 Query 15442 CCTGGCTACATCATCGCCGTGGCAGACGAGCTGCTTTCCGGAAAGGTTATGGGCGGCCGC 15501 ||||| ||| | ||| | | || ||||||||||| | || | ||||||| ||| Sbjct 2973 CCTGGATACGTGATCCCAATCGCGGACGAGCTGCTGGCGGGCCGGCCGGTGGGCGGGCGC 2914 Query 15502 ATCAGCGCCGTTAACGGTCGCGTTATCAAACTTGACCGCGTAGCTGATGCAGCACCAGGT 15561 ||| || || ||||| || |||| || ||||||| | | || || ||| Sbjct 2913 ATCTCTGCGGTGAACGGCAAAGTCATCACCCTGGACCGCGATACCCAGGCGAAGCCCGGT 2854 Query 15562 GATCGCCTTATTCTCAACCTTCCCTCCGGAGCGTCGCAGAGCAGGACCATTCAGGCCGTG 15621 || ||||| || |||||||| || |||| || || || | ||| | || || Sbjct 2853 GACCGCCTGATCCTCAACCTGCCTGACGGAAAGTGCGAGGGCCGCACCGTGCAACTGGTC 2794 Query 15622 AACGGGGAATCAGTCACAGTCACCACGGCATACAGTGAGACGCCACAGGCCGAAGCTGTT 15681 | ||| ||||| ||||||||||| ||| | | |||| || ||| || Sbjct 2793 AGCGGCCGCCAGGTCACGGTCACCACGGCGTACTCCGTGGCGCCTGAGCGTGAACTGGTG 2734 Query 15682 TGGGTGGTTGAATCTGACGAGCTCTACGCGCAGCAGTATCGAGTTGTCAGCGTTTCC 15738 |||| | | || ||||||| || | | || |||||| || |||||||||| Sbjct 2733 TGGGCGCTCGACGCTGACGACCTGGCCATCCCGCTGTATCGGGTGACCAGCGTTTCC 2677 Score = 80.6 bits (88), Expect = 7e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 14602 AAGATCGGCGACACGATGATGCT-GCAGAGCTTCACCGAGGTGATTGACGCCAAACTGCG 14660 || ||| |||||||||| | | || | ||||||| | |||||| |||||||| |||| Sbjct 3810 AAAATCTCCGACACGATGCAGATCGCCG-GCTTCACGGGGGTGATCGACGCCAAGTTGCG 3752 Query 14661 CTACCCGAACACCGCGCTGCTCTACGTCGAATT 14693 ||||||||||||||| |||||||| |||| || Sbjct 3751 GTACCCGAACACCGCGTTGCTCTACATCGAGTT 3719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124504900763356