Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq8566 187 6e-43 >seq8566 Length=6269 Score = 187 bits (206), Expect = 6e-43 Identities = 786/1222 (64%), Gaps = 42/1222 (3%) Strand=Plus/Plus Query 2768 CCAGACCGAGGCGACATCGCTGGCGTTTACGGCGCTGACGCGCGCCATGTAC-CGCCCGG 2826 ||||| ||| | || || |||| | || | || ||| || |||| ||| |||||| Sbjct 2302 CCAGATCGACGAGATCTCAAAGGCGCTCACCGAGCGGACCCGGGCCAAGTAGGCGCCCGA 2361 Query 2827 CATAAATGCCCAGCACCTCAAAGCCGAGCGAGCTTGTGCGCGGCACATTCACCCAGTCGC 2886 || ||||| || |||| | | ||| | ||| ||| |||| || | ||||| || Sbjct 2362 G-TAGATGCCAGTGACGTCAACACTGGTCGAACCTGTCCGCTGCACCTTGATCCAGTTGC 2420 Query 2887 CGTTATCCTTGCGCCACTGGCATTCATACGTCACCGCGCCGGGTGCCGCGGGCCAGGCGA 2946 || | ||||||||||||| ||||| | ||||| ||| |||||||||| | || Sbjct 2421 CGCTGTCCTTGCGCCACTCCACGTCATAGGCGACCGCACCGTTCACCGCGGGCCACGAGA 2480 Query 2947 CACGCAGGGTTTCCACGCTGAGACCCTGCACCACGCGGCTGTAACTGC---TGAGGGTCA 3003 || ||| | | | ||||| |||| || ||| || | || || | Sbjct 2481 TGTTCATGGTGCTGATGGCAATGCCCTGGTTCACG--GC-GTAGCTCGACGTCAGCGTAA 2537 Query 3004 CGGAGGCTGGCGGTGCCTGCACGCCCGGTG----GAATG--GCTGATACCGGACGCTCAT 3057 || ||| |||||| | || | |||| |||| |||||| ||| ||||| | Sbjct 2538 CGCTGGC---CGGTGCTGGAACTAC-GGTGATCGGAATAACGCTGAT--CGGCCGCTCTT 2591 Query 3058 CGAGCCGCGCGCCGGAATCGATGGCGGCATATTTATCCGGGTTGTGCTGCACGGCGCTGA 3117 | ||||| ||||||| |||||| || | || ||||| || |||||| || || Sbjct 2592 CCAGCCGAGCGCCGGTGTCGATGTGCGCGAACTTGCTCGGGTCGTACTGCACAGCCGAGA 2651 Query 3118 TGGTCCAGGTGCCGTCGTTATTGTCTTCAA-CGGACGTGACGCGGTACTGCTGGATTGCC 3176 | | ||| | | | | | || || || || || ||| || |||| ||| Sbjct 2652 TTTCGAACACGCCAG-GCTCTGGCCGGGAAACGCTGGTCACCCGATACAGCGGGATGGCC 2710 Query 3177 ACATCCTGCGCATCCACCGACCAGACCGCCTCGCGCTCCGGCGTTTCGCTGAATACCGCA 3236 | || | || || | || ||| ||| || ||||| |||| || | | ||| Sbjct 2711 AGGTCGTCAGCGTCGAGCGCCCACACCAGTTCACGCTCAGGCGCCACGGAGTACGCCGTG 2770 Query 3237 GATACCGTGACGTTTCGGCCGCTGACCGCCTGAAGGGTACGGGCCTGTGATTTGCCGGAC 3296 | |||||||| | |||||||||||| || | ||| ||| ||| | || ||| Sbjct 2771 GTGACCGTGACCTGGCGGCCGCTGACCAGTTGCACGGTGCGGCCCTCGCACTTTCCGTCA 2830 Query 3297 GGCAGGTTGACGATAAGCCTGTCGCCCGCTTTTGCATCCGGCGCCCGGTCGAGCGTCAGC 3356 |||||||||| ||| || | ||| || | || || | | | ||||| || || | Sbjct 2831 GGCAGGTTGAGGATCAGGCGGTCACCGGGCTTCGCCTGGGTATCGCGGTCCAGGGTGATG 2890 Query 3357 GCGCGACCGTTCACCTGACTGATACGCCCGCCCATCACCCGCCCCGACAGATACTGATCC 3416 | ||||||||| | ||| |||||||||| | ||| |||| ||| || ||| Sbjct 2891 ACTTTGCCGTTCACCGCAGAGATGCGCCCGCCCACCGGCCGGCCCGCCAGCAGCTCGTCC 2950 Query 3417 GCCACGCCGATGATATGGCCCGGCAGCGGGATCATGCCTTCCAGCCCAGTGGTGAAACTC 3476 || | ||| | | || || |||||||| || || || || |||| | Sbjct 2951 GCGATTGGGATCACGTATCCAGGGAGCGGGATGCGCCCATCAAGGCCGACCTTGAATGTG 3010 Query 3477 ACCATCCGGTCTTTAGCATTTGTCAGCAGCGCCCAGCGGCCGCGGCGGTTGGCCTCGGTA 3536 || || ||| || | ||||||||||||||||| ||||||||| | ||||| | | Sbjct 3011 ACAGCCCTGTCCTTGGAGTTTGTCAGCAGCGCCCACTTGCCGCGGCGCTGAGCCTCCG-A 3069 Query 3537 CGC-CGCGTGCAGCCGATGGCGGATATCTGCGTCTGGCGCACGCCGTAGCGCCGCACCAG 3595 | | || ||||| |||||||| |||| | | | |||| ||||| ||| || Sbjct 3070 CTCGCGGGTGCAACCGATGGCACTGATCTCCAGCGGATTGTCGCCATAGCGACGCTGAAG 3129 Query 3596 ATCAGGCTCCATCACCGCTTCCACTTCATCGGTGTAATGGTTCTCCGGGTTTGACCAGCT 3655 | | || | ||||| || ||| | ||||| |||| ||||| |||| Sbjct 3130 CTTGGCATCAGTAACCGCAGTGACGTCAGTGTCGTAATTGTTCAGTGGGTTGTCGTAGCT 3189 Query 3656 CACCAT--CGCCGTTGAATAACGGTTCTTCTCGCTGCCGCTGGCGTAGGAGAATTTGCCG 3713 | || ||| | || || ||| | ||| |||||| |||| ||| ||||| Sbjct 3190 GATCAGTGCGCGGGTG--TACCGGGTGCGCTCCGACGCGCTGGAATAGGTGAACTTGCCA 3247 Query 3714 TCAATAACGTTGGCGCGGGTGTAGACATACGTCATAT-------CGCGCGGCATATCCGC 3766 || || ||||| || ||||| ||| | | |||| | ||||||||||||||| Sbjct 3248 TCGATGACGTTTGCCCGGGTATAGGCGAA-GTCAAAGTCGGTGGCGCGCGGCATATCCGA 3306 Query 3767 CAGCGCGGCCAGCTGATTACCGGCCCAGTATGTCATGCCGCGGAAGATGCTCGCCAGGTC 3826 ||| | | || ||| ||||||||| ||||| || ||| |||| || | ||| Sbjct 3307 CAGGGTGAACACCTGGCCTTGGGCCCAGTAGGTCATCCCCCGGTAGATCGCCGAGATGTC 3366 Query 3827 GCGCAGCACCGTAAACGCCTCGTTCTGGCTCTGGATATACACGTCGCAGAGAAAACGTGG 3886 ||||||| || | || ||| || |||||| | | || || ||||| || || || Sbjct 3367 ACGCAGCAACGACCAGGCGTCGGCCTTGCTCTGTAGGTTCAGGTTGCAGATGAAGCGCGG 3426 Query 3887 CTCAGTACCGCTGCCGCCGGTACCGTCCGGCACGGGCTGATCGCAGTGCTGCGCGATGCG 3946 ||| | | |||||| ||||||||||||| ||| ||||||| ||||| |||||| Sbjct 3427 CTC----CTG--GCCGCCCTTACCGTCCGGCACCAACTGGTCGCAGTACTGCGAGATGCG 3480 Query 3947 GTAGAGTTCCCACTTGTCCACC 3968 || || ||||||||||| ||| Sbjct 3481 ATAAAGCTCCCACTTGTCGACC 3502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124658428874044